New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4163289	26 (1.120)	4 (0.180)	4/240	NT	14.1%	coding (217/1329 nt)	pssA	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
	?	NC_002947	= 4163304	24 (1.090)					coding (202/1329 nt)	pssA	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase

CCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCT  >  NC_002947/4163156‑4163452                                                                                                                                                     |                                                                                                                                                     ccATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTg                                                                                                                                                     >  1:320793‑M2/1‑149 (MQ=255)   aTGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTggc                                                                                                                                                   <  2:281280‑M2/150‑4 (MQ=255)      aaTGGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTggcctg                                                                                                                                                >  2:69513‑M2/1‑144 (MQ=255)        tCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGt                                                                                                                                              >  1:318594/1‑150 (MQ=255)                tCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCa                                                                                                                                      >  2:34114/1‑150 (MQ=255)                    gCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACAATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCa                                                                                                                                  >  2:467869/1‑150 (MQ=255)                     cccGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAg                                                                                                                                 >  1:238409/1‑150 (MQ=255)                        gcgcAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGAc                                                                                                                              >  1:392074/1‑150 (MQ=255)                        gcgcAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGAc                                                                                                                              >  1:601336/1‑150 (MQ=255)                            aaCTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTggcct                                                                                                                                                 <  2:192466‑M2/127‑6 (MQ=255)                            aaCTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTggcct                                                                                                                                                 >  1:192466‑M2/1‑122 (MQ=255)                                       cgCCTGGTATCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTc                                                                                                               >  1:518661/2‑150 (MQ=255)                                          ctggtatcAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCAtc                                                                                                            <  2:518661/143‑1 (MQ=255)                                                   ggcggcATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCTCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAg                                                                                                   <  2:238409/150‑1 (MQ=255)                                                      ggcATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACAATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTa                                                                                                <  1:467869/150‑1 (MQ=255)                                                         aTTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACaa                                                                                             >  2:479490/1‑150 (MQ=255)                                                                 gCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGcgacga                                                                                     <  1:425040/150‑1 (MQ=255)                                                                        cccGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGAt                                                                              <  2:484080/150‑1 (MQ=255)                                                                          cGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATgc                                                                            >  2:50692/1‑150 (MQ=255)                                                                              ccccAGCAGCCCGCGCCTGGCGCGGAACCAGTCGCCCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCg                                                                        >  1:96571/1‑150 (MQ=255)                                                                               cccAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGa                                                                       <  2:318594/150‑1 (MQ=255)                                                                                  agcagcCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTc                                                                    >  1:326889/1‑150 (MQ=255)                                                                                            gcCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGa                                                          <  2:310711/150‑1 (MQ=255)                                                                                                        aCCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAAca                                              <  2:392074/150‑1 (MQ=255)                                                                                                           aGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAGCGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAAcaggc                                           <  2:96571/150‑1 (MQ=255)                                                                                                               gACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACaggcaggc                                       >  2:42600/1‑150 (MQ=255)                                                                                                                       tGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAg                               >  2:155951/1‑150 (MQ=255)                                                                                                                          tGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAGccc                            >  1:341127/1‑150 (MQ=255)                                                                                                                            aTCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGACCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGACAGGCGCGGTAAGCCGTg                          >  2:231589/1‑150 (MQ=255)                                                                                                                              ctcCAGGCCTGGCCGCTCGGCCTTggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaattccgcctggta                                                             >  2:562248‑M2/1‑24 (MQ=255)                                                                                                                              ctcCAGGCCTGGCCGCTCGGCCTTggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaattccgcctggta                                                             <  1:562248‑M2/113‑90 (MQ=255)                                                                                                                                 cAGGCCTGGCCGCTCGGCCTTggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatg                                                                       <  2:302900‑M2/100‑80 (MQ=255)                                                                                                                                 cAGGCCTGGCCGCTCGGCCTTggcctggagatcaccatcgtggtcgactggttccgcgccaggcgcgggctgctgggggccgggcgtcagccgggcaatg                                                                       >  1:302900‑M2/1‑21 (MQ=255)                                                                                                                                        ggCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAGCCCTGGCATCGGgcagc              <  1:34114/150‑1 (MQ=255)                                                                                                                                                    ttGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCt  >  1:563867/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCATGAATCGCGATGTCCAGCCCGCGCAACTGGCGCTGGGCCTGATACCAGGCGGCATTGCCCGGCTGACGCCCGGCCCCCAGCAGCCCGCGCCTGGCGCGGAACCAGTCGACCACGATGGTGATCTCCAGGCCTGGCCGCTCGGCCTTGGCCTGGTACAAGGCATCCAGGACTTCCTGGCCAGCCTCATCCTCCTGCAGGTACAACGCGACGATAACGATGCGCCGAGTCGCCGCACGGATGCGCTCGAACAGGCAGGCGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCT  >  NC_002947/4163156‑4163452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.