| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4477202 | 15 (0.640) | 4 (0.180) | 4/244 | NT | 23.9% | coding (834/1119 nt) | PP_3968 | sensor histidine kinase |
| ? | NC_002947 | = 4477239 | 11 (0.490) | coding (797/1119 nt) | PP_3968 | sensor histidine kinase | |||||
GTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCAGTTCCTCGATGACCGAGCGACAGATCGGGTT > NC_002947/4477058‑4477351 | gTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAg < 2:268329/150‑1 (MQ=255) tAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAgg < 2:602779/150‑1 (MQ=255) ctctGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAAtt < 1:391526/150‑1 (MQ=255) tctGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTg > 2:251653/1‑150 (MQ=255) gAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGAc < 1:251653/150‑1 (MQ=255) aTAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGctcaggtcttctccaatttgattggcaatgccctgctc > 2:10192‑M1/1‑112 (MQ=255) tAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGctcaggtcttctccaatttgattggcaatgccctgctcc > 1:610430‑M1/1‑111 (MQ=255) gCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGctcaggtcttctccaatttgattggcaatgccctgctccatgg < 1:10192‑M1/150‑44 (MQ=255) cacaTCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGctcaggtcttctccaatttgattggcaatgccctgctccatggtgac < 2:610430‑M1/150‑48 (MQ=255) cacaTCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATc < 1:289453/150‑1 (MQ=255) gggAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCaaa > 2:68644/1‑150 (MQ=255) gCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCgg < 1:191701/150‑1 (MQ=255) tctcCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTg > 1:563146/1‑150 (MQ=255) gtgCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGa > 2:582846/1‑150 (MQ=255) gCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGtt < 2:563146/150‑1 (MQ=255) gCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGt > 2:90188/1‑149 (MQ=255) gCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGt < 1:90188/149‑1 (MQ=255) agaaAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCcg > 2:18939/1‑150 (MQ=255) tGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCa < 1:68644/150‑1 (MQ=255) tCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCAGTTCCTCGATGACCGAGc < 2:515043/150‑1 (MQ=255) gTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGccatggtgactcgacgctaccgatccaggtcactttcttcagcgaagccggagttccgcgcttcagcgtgcacaattccggagagccgattcccagcgatgtg < 2:610430‑M2/150‑104 (MQ=255) ccATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGccatggtgactcgacgctaccgatccaggtcactttcttcagcgaagccggagttccgcgcttcagcgtgcacaattccggagagccgattcccagcgatgtgatgc < 1:10192‑M2/150‑108 (MQ=255) ggAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGccatggtgactcgacgctaccgatccaggtcactttcttcagcgaagccggagttccgcgcttcagcgtgcacaattccggagagccgattcccagcgatgtgatgcccta > 1:610430‑M2/1‑39 (MQ=255) gAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGccatggtgactcgacgctaccgatccaggtcactttcttcagcgaagccggagttccgcgcttcagcgtgcacaattccggagagccgattcccagcgatgtgatgccctat > 2:10192‑M2/1‑38 (MQ=255) | GTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCAGTTCCTCGATGACCGAGCGACAGATCGGGTT > NC_002947/4477058‑4477351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |