New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4477202	15 (0.640)	4 (0.180)	4/244	NT	23.9%	coding (834/1119 nt)	PP_3968	sensor histidine kinase
	?	NC_002947	= 4477239	11 (0.490)					coding (797/1119 nt)	PP_3968	sensor histidine kinase

CACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCAGTTCCTCGATGACCGAGCGACAGATCGGGTTCAGCTCCACCTGCTGCAGGTGCACCGGGATA  >  NC_002947/4477100‑4477382                                                                                                                                            |                                                                                                                                                cacaTCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATc                                                                                                                                       <  1:289453/150‑1 (MQ=255)          gggAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCaaa                                                                                                                              >  2:68644/1‑150 (MQ=255)                  gCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCgg                                                                                                                      <  1:191701/150‑1 (MQ=255)                    tctcCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTg                                                                                                                    >  1:563146/1‑150 (MQ=255)                               gtgCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGa                                                                                                         >  2:582846/1‑150 (MQ=255)                                     gCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGtt                                                                                                   <  2:563146/150‑1 (MQ=255)                                     gCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGt                                                                                                    <  1:90188/149‑1 (MQ=255)                                     gCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGt                                                                                                    >  2:90188/1‑149 (MQ=255)                                                                  agaaAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCcg                                                                      >  2:18939/1‑150 (MQ=255)                                                                        tGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCa                                                                <  1:68644/150‑1 (MQ=255)                                                                                          tCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCAGTTCCTCGATGACCGAGc                                              <  2:515043/150‑1 (MQ=255)                                                                                              gTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGccatggtgactcgacgctaccgatccaggtcactttcttcagcgaagccggagttccgcgcttcagcgtgcacaattccggagagccgattcccagcgatgtg                                          <  2:610430‑M2/150‑104 (MQ=255)                                                                                                  ccATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGccatggtgactcgacgctaccgatccaggtcactttcttcagcgaagccggagttccgcgcttcagcgtgcacaattccggagagccgattcccagcgatgtgatgc                                      <  1:10192‑M2/150‑108 (MQ=255)                                                                                                      ggAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGccatggtgactcgacgctaccgatccaggtcactttcttcagcgaagccggagttccgcgcttcagcgtgcacaattccggagagccgattcccagcgatgtgatgcccta                                  >  1:610430‑M2/1‑39 (MQ=255)                                                                                                       gAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGccatggtgactcgacgctaccgatccaggtcactttcttcagcgaagccggagttccgcgcttcagcgtgcacaattccggagagccgattcccagcgatgtgatgccctat                                 >  2:10192‑M2/1‑38 (MQ=255)                                                                                                                                      aCCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCAGTTCCTCGATGACCGAGCGACAGATCGGGTTCAGCTCCACCTGCTGCAGGTGCACCGGGATa  >  1:422392/1‑150 (MQ=255)                                                                                                                                            |                                                                                                                                                CACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTGGAGAAGACCTGAGCCATGCGATCAGGATCAAACTGACCGGTGATCTGTACGGATTCGTTCAAAATAATGTTCGCCCAAGGGGAACCCGCGCGCAGTTCCTCGATGACCGAGCGACAGATCGGGTTCAGCTCCACCTGCTGCAGGTGCACCGGGATA  >  NC_002947/4477100‑4477382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.