New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4572333	25 (1.070)	6 (0.270)	5/242	NT	19.7%	coding (2153/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	= 4572365	25 (1.130)					coding (2185/2775 nt)	treY	maltooligosyl trehalose synthase

ATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTC  >  NC_002947/4572190‑4572478                                                                                                                                                |                                                                                                                                                  aTACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAgctgcg                                                                                                                                             >  2:97629‑M1/1‑144 (MQ=255)   aCGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGACAACCAGCAACTccgcc                                                                                                                                           >  1:568563/1‑149 (MQ=255)    cGCCGAGCGTGTTCGCCAGTGGCAGCAGCAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGTAGGTTACGTGAACAGCGTGCTGCTGGACAGCGAGAACCAGCAACTGCGCaa                                                                                                                                          <  1:565191/150‑1 (MQ=255)     gCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAg                                                                                                                                         >  1:109560/1‑150 (MQ=255)          gCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCt                                                                                                                                    <  1:444143/150‑1 (MQ=255)              gtTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGcc                                                                                                                                >  1:165670/1‑150 (MQ=255)              gtTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGcc                                                                                                                                <  1:384942/150‑1 (MQ=255)                   ccAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGAcgc                                                                                                                           >  2:222698/1‑150 (MQ=255)                    cAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAgctgcgccgcgtcggccagcgactt                                                                                                                          >  2:133887‑M1/1‑125 (MQ=255)                      gTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAgctgcgccgcgtcggccagcgacttgc                                                                                                                        <  1:133887‑M1/150‑28 (MQ=255)                         gcagcaGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCa                                                                                                                     <  1:387617/150‑1 (MQ=255)                                aaGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAgctgcgccgcgtcggccagcgacttgcgcagttgctg                                                                                                              <  1:97629‑M1/150‑38 (MQ=255)                                 aGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCtgctgg                                                                                                             >  1:434452‑M2/1‑144 (MQ=255)                                 aGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCATTGAGTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCtgctgg                                                                                                             >  1:497202‑M2/1‑144 (MQ=255)                                    cccTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCt                                                                                                          <  1:278013/150‑1 (MQ=255)                                     ccTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGc                                                                                                                                 <  2:69348/126‑1 (MQ=255)                                     ccTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGc                                                                                                                                 >  1:69348/1‑126 (MQ=255)                                                     cTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAAt                                                                                         >  1:231140/1‑150 (MQ=255)                                                                           cGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTgc                                                                   <  1:451869/150‑1 (MQ=255)                                                                                     cTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAgctgcgccgcgtcggccagcgacttgc                                                                                                                        >  1:101118‑M1/1‑60 (MQ=255)                                                                                     cTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAgctgcgccgcgtcggccagcgacttgc                                                                                                                        <  2:101118‑M1/87‑28 (MQ=255)                                                                                                     gcTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGAc                                                            <  2:247484/131‑1 (MQ=255)                                                                                                     gcTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGAc                                                            >  1:247484/1‑131 (MQ=255)                                                                                                     gcTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGAc                                         <  1:589250/150‑1 (MQ=255)                                                                                                       tCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCt                                       >  1:146997/1‑150 (MQ=255)                                                                                                              cTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGcc                                                                                     <  2:541371/97‑1 (MQ=255)                                                                                                              cTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGcc                                                                                     >  1:541371/1‑97 (MQ=255)                                                                                                               tCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg                               <  2:231140/150‑1 (MQ=255)                                                                                                                cGACGGCCTGCTGCTGTACAACGAGTACCAGCAACCGCTCAATTCGCTTGCCGACGTGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGCCCTTGTCCACGCCCTCTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAggg                              <  2:119442/150‑1 (MQ=255)                                                                                                                                gACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGAc              <  2:568563/150‑1 (MQ=255)                                                                                                                                gACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGAc              <  2:165670/150‑1 (MQ=255)                                                                                                                                           ccAGCAgctgcgccgcgtcggccagcgacttgcgcagttgctggttctcgctgtccagcagcaggccgtcgaggtaatgagcgcaggcgccttcgtaggcctcgttcggcgcgctccagctactgcgcagcttggcctcgcgcagggcct   >  1:434452‑M1/1‑6 (MQ=255)                                                                                                                                           ccAGCAgctgcgccgcgtcggccagcgacttgcgcagttgctggttctcgctgtccagcagcaggccgtcgaggtaatgactcaatgcgccttcgtaggcctcgttcggcgcgctccagctactgcgcagcttggcctcgcgcagggcct   >  1:497202‑M1/1‑6 (MQ=255)                                                                                                                                           ccAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg                               <  2:479464/122‑1 (MQ=255)                                                                                                                                           ccAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg                               >  1:479464/1‑122 (MQ=255)                                                                                                                                            cAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCtgctggttctcgctgtccagcagcaggccgtcgaggtaatgagcgcaggcgccttcgtaggcctcgttcggcgcgctccagctactgcgcagcttggcctcgcgcagggcctt  <  1:97629‑M2/150‑114 (MQ=255)                                                                                                                                            cAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg                               <  2:135147/121‑1 (MQ=255)                                                                                                                                            cAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg                               >  1:135147/1‑121 (MQ=255)                                                                                                                                                |                                                                                                                                                  ATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTC  >  NC_002947/4572190‑4572478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.