New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4572333 | 25 (1.070) | 6 (0.270) | 5/242 | NT | 19.7% | coding (2153/2775 nt) | treY | maltooligosyl trehalose synthase |
? | NC_002947 | = 4572365 | 25 (1.130) | coding (2185/2775 nt) | treY | maltooligosyl trehalose synthase |
AGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTCGACCCGGACAACCGCCGCGCCGTGGACTACG > NC_002947/4572222‑4572509 | aGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCtgctgg > 1:434452‑M2/1‑144 (MQ=255) aGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCATTGAGTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCtgctgg > 1:497202‑M2/1‑144 (MQ=255) cccTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCt < 1:278013/150‑1 (MQ=255) cTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAAt > 1:231140/1‑150 (MQ=255) cGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTgc < 1:451869/150‑1 (MQ=255) gcTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGAc > 1:247484/1‑131 (MQ=255) gcTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGAc < 2:247484/131‑1 (MQ=255) gcTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGAc < 1:589250/150‑1 (MQ=255) tCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCt > 1:146997/1‑150 (MQ=255) cTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGcc < 2:541371/97‑1 (MQ=255) cTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGcc > 1:541371/1‑97 (MQ=255) tCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg < 2:231140/150‑1 (MQ=255) cGACGGCCTGCTGCTGTACAACGAGTACCAGCAACCGCTCAATTCGCTTGCCGACGTGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGCCCTTGTCCACGCCCTCTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAggg < 2:119442/150‑1 (MQ=255) gACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGAc < 2:165670/150‑1 (MQ=255) gACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGAc < 2:568563/150‑1 (MQ=255) ccAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg > 1:479464/1‑122 (MQ=255) ccAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg < 2:479464/122‑1 (MQ=255) cAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCtgctggttctcgctgtccagcagcaggccgtcgaggtaatgagcgcaggcgccttcgtaggcctcgttcggcgcgctccagctactgcgcagcttggcctcgcgcagggcctt < 1:97629‑M2/150‑114 (MQ=255) cAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg > 1:135147/1‑121 (MQ=255) cAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAgg < 2:135147/121‑1 (MQ=255) gcgcAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTCGACCCGGa < 1:222698/150‑1 (MQ=255) gcAAGTCGCTGGCCGACGCGGCGCAGCtgctggttctcgctgtccagcagcaggccgtcgaggtaatgagcgcaggcgccttcgtaggcctcgttcggcgcgctccagctactgcgcagcttggcctcgcgcagggccttctgctgccac < 1:133887‑M2/150‑124 (MQ=255) gcAAGTCGCTGGCCGACGCGGCGCAGCtgctggttctcgctgtccagcagcaggccgtcgaggtaatgagcgcaggcgccttcgtag > 1:101118‑M2/1‑27 (MQ=255) gcAAGTCGCTGGCCGACGCGGCGCAGCtgctggttctcgctgtccagcagcaggccgtcgaggtaatgagcgcaggcgccttcgtag < 2:101118‑M2/87‑61 (MQ=255) gcAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTCGACCCGGACa > 1:54831/1‑150 (MQ=255) aaGTCGCTGGCCGACGCGGCGCAGCtgctggttctcgctgtccagcagcaggccgtcgaggtaatgagcgcaggcgccttcgtaggcctcgttcggcgcgctccagctactgcgcagcttggcctcgcgcagggccttctgctgccactg > 2:133887‑M2/1‑25 (MQ=255) aaGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAg > 2:381265/1‑63 (MQ=255) aaGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAg < 1:381265/63‑1 (MQ=255) aaGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTCGACCCGGACAAc < 2:146997/150‑1 (MQ=255) gTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTCGACCCGGACAAccg > 1:506868/1‑150 (MQ=255) gCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTc > 1:490960/1‑133 (MQ=255) gCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTc < 2:490960/133‑1 (MQ=255) cGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTCGACCCGGACAACCGCCGCGCCGt < 1:413370/150‑1 (MQ=255) cgcAGCtgctggttctcgctgtccagcagcaggccgtcgaggtaatgagcgcaggcgccttcgtaggcctcgttcggcgcgctccagctactgcgcagcttggcctcgcgcagggccttctgctgccactggcgaacacgctcggcgtat > 2:97629‑M2/1‑6 (MQ=255) | AGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAACTGCGCAAGTCGCTGGCCGACGCGGCGCAGCTGCTGGCCTGCCCCGGCGCTCTCAATGGCCTGGTCCAGGCCCTGTTGCGCATGACCACACCCGGTGTGCCCGACCTGTACCAGGGTAACGAATACTGGGACTTCAGCCTGGTCGACCCGGACAACCGCCGCGCCGTGGACTACG > NC_002947/4572222‑4572509 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |