New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4580793 =	32 (1.370)	3 (0.130)	3/244	NT	8.5%	coding (2679/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase
	?	NC_002947	4580833 =	34 (1.520)					coding (2639/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase

ATGTGCTGGGCCAGGCCGTCACGCTGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTGCGC  >  NC_002947/4580662‑4580939                                                                                                                                    |                                                                                                                                                   aTGTGCTGGGCCAGGCCGTCACGCTGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTgc                                                                                                                                  <  1:123118/150‑1 (MQ=255) aTGTGCTGGGCCAGGCCGTCACGCTGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTgc                                                                                                                                  >  2:503717/1‑150 (MQ=255)            cAGGCCGTCACGCTGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTggg                                                                                                                       <  1:343569/150‑1 (MQ=255)              ggCCGTCACGCTGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGAACTGGGCGTACCAGCGCTCGCTGTCCTGCGCATCGCTGGGgc                                                                                                                     >  2:205013/1‑150 (MQ=255)                         tGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAg                                                                                                          <  2:261470/150‑1 (MQ=255)                             gctgcAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCg                                                                                                      <  2:125655/150‑1 (MQ=255)                              cactgacgcattggccgaactcagcggctttgccgccttgcttggccagcgcctgggcgagatgcacctgctgctggccgcacccaccgaagacccggccttCCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCgg                                                                                                     >  1:247230‑M1/103‑150 (MQ=255)                               tgcAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCggg                                                                                                    >  1:208384/1‑150 (MQ=255)                                  aGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCt                                                                                                 >  1:569624/1‑150 (MQ=255)                                       gtcgACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCggt                                                                                            <  2:523676/150‑1 (MQ=255)                                             cAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCg                                                                                              <  1:176773/142‑1 (MQ=255)                                             cAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCg                                                                                              >  2:176773/1‑142 (MQ=255)                                                  tcagcggctttgccgccttgcttggccagcgcctgggcgagatgcacctgctgctggccgcacccaccgaagacccggccttCCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTgg                                                                                                             >  1:164061‑M1/83‑122 (MQ=255)                                                  tcagcggctttgccgccttgcttggccagcgcctgggcgagatgcacctgctgctggccgcacccaccgaagacccggccttCCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTgg                                                                                                             <  2:164061‑M1/40‑1 (MQ=255)                                                    tGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCcagc                                                                               >  2:486362/1‑150 (MQ=255)                                                      gCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCg                                                                                                      <  1:248959/125‑1 (MQ=255)                                                      gCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCg                                                                                                      >  2:248959/1‑125 (MQ=255)                                                      gCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCcagcag                                                                             >  1:347811/1‑150 (MQ=255)                                                                tCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCAtc                                                                   >  1:317221/1‑150 (MQ=255)                                                                   aGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCg                                                                >  2:513180/1‑150 (MQ=255)                                                                        gtCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAg                                                           <  1:503717/150‑1 (MQ=255)                                                                        gtCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAg                                                           <  2:347811/150‑1 (MQ=255)                                                                           gcgATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACGAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAACGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCCGATGCATCTCGCACAGgca                                                        >  2:14181/1‑149 (MQ=255)                                                                               tGCTGGGCCAGCAGGTCGAGCGCGTGCGTCCGTTCAGTGCTGATCTGTGCCCACCAGCGCTCGCTCTCCTGCGCGTCGCGGGGGCGCCGCGCGAAGCCCCGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTCCAGCTCGCCCAGCCGCTgg                                                    <  2:506933/150‑1 (MQ=255)                                                                                   gggTCAGCAGGGCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCcaa                                                <  2:246346/150‑1 (MQ=255)                                                                                       cagcagGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCcaagcaa                                            >  2:253737/1‑150 (MQ=255)                                                                                           agGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATTGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCGGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAggcg                                        <  1:205013/150‑1 (MQ=255)                                                                                                  gggCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGc                                 <  1:513180/150‑1 (MQ=255)                                                                                                          gTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGt                         <  2:605563/150‑1 (MQ=255)                                                                                                               ttcagtGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGc                    <  1:486362/150‑1 (MQ=255)                                                                                                                    tGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAggc                                         >  2:331384/1‑124 (MQ=255)                                                                                                                    tGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAggc                                         <  1:331384/124‑1 (MQ=255)                                                                                                                       tGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGt            <  1:508004/150‑1 (MQ=255)                                                                                                                         aTCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCa          <  1:253737/150‑1 (MQ=255)                                                                                                                             gtgCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAgtgt      <  2:569624/150‑1 (MQ=255)                                                                                                                                 acacCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTgcgc  >  1:516377/1‑150 (MQ=255)                                                                                                                                    |                                                                                                                                                   ATGTGCTGGGCCAGGCCGTCACGCTGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTGCGC  >  NC_002947/4580662‑4580939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.