New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4580793 =	32 (1.370)	3 (0.130)	3/244	NT	8.5%	coding (2679/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase
	?	NC_002947	4580833 =	34 (1.520)					coding (2639/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase

TGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTGCGCTTCGGCGTCGTTGCGGGTGGGC  >  NC_002947/4580686‑4580961                                                                                                                                                    |                                                                                                                                 tGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAg                                                                                                                                <  2:261470/150‑1 (MQ=255)     gctgcAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCg                                                                                                                            <  2:125655/150‑1 (MQ=255)      cactgacgcattggccgaactcagcggctttgccgccttgcttggccagcgcctgggcgagatgcacctgctgctggccgcacccaccgaagacccggccttCCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCgg                                                                                                                           >  1:247230‑M1/103‑150 (MQ=255)       tgcAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCggg                                                                                                                          >  1:208384/1‑150 (MQ=255)          aGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCt                                                                                                                       >  1:569624/1‑150 (MQ=255)               gtcgACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCggt                                                                                                                  <  2:523676/150‑1 (MQ=255)                     cAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCg                                                                                                                    <  1:176773/142‑1 (MQ=255)                     cAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCg                                                                                                                    >  2:176773/1‑142 (MQ=255)                            tGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCcagc                                                                                                     >  2:486362/1‑150 (MQ=255)                              gCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCg                                                                                                                            >  2:248959/1‑125 (MQ=255)                              gCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCg                                                                                                                            <  1:248959/125‑1 (MQ=255)                              gCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCcagcag                                                                                                   >  1:347811/1‑150 (MQ=255)                                        tCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCAtc                                                                                         >  1:317221/1‑150 (MQ=255)                                           aGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCg                                                                                      >  2:513180/1‑150 (MQ=255)                                                gtCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAg                                                                                 <  1:503717/150‑1 (MQ=255)                                                gtCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAg                                                                                 <  2:347811/150‑1 (MQ=255)                                                   gcgATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACGAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAACGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCCGATGCATCTCGCACAGgca                                                                              >  2:14181/1‑149 (MQ=255)                                                       tGCTGGGCCAGCAGGTCGAGCGCGTGCGTCCGTTCAGTGCTGATCTGTGCCCACCAGCGCTCGCTCTCCTGCGCGTCGCGGGGGCGCCGCGCGAAGCCCCGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTCCAGCTCGCCCAGCCGCTgg                                                                          <  2:506933/150‑1 (MQ=255)                                                           gggTCAGCAGGGCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCcaa                                                                      <  2:246346/150‑1 (MQ=255)                                                               cagcagGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCcaagcaa                                                                  >  2:253737/1‑150 (MQ=255)                                                                   agGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATTGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCGGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAggcg                                                              <  1:205013/150‑1 (MQ=255)                                                                          gggCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGc                                                       <  1:513180/150‑1 (MQ=255)                                                                                  gTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGt                                               <  2:605563/150‑1 (MQ=255)                                                                                       ttcagtGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGc                                          <  1:486362/150‑1 (MQ=255)                                                                                            tGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAggc                                                               <  1:331384/124‑1 (MQ=255)                                                                                            tGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAggc                                                               >  2:331384/1‑124 (MQ=255)                                                                                               tGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGt                                  <  1:508004/150‑1 (MQ=255)                                                                                                 aTCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCa                                <  1:253737/150‑1 (MQ=255)                                                                                                    ccggccttccagccgcgccccagcgatgcgcaggacagcgagcgctggAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAgtg                             >  1:247230‑M2/49‑150 (MQ=255)                                                                                                     gtgCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAgtgt                            <  2:569624/150‑1 (MQ=255)                                                                                                         acacCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTgcgc                        >  1:516377/1‑150 (MQ=255)                                                                                                            ccagccgcgccccagcgatgcgcaggacagcgagcgctggAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGa                                                 >  1:164061‑M2/41‑122 (MQ=255)                                                                                                            ccagccgcgccccagcgatgcgcaggacagcgagcgctggAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGa                                                 <  2:164061‑M2/82‑1 (MQ=255)                                                                                                                     gctGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTGCGCTTCGGCGTCGtt            >  1:100370/1‑150 (MQ=255)                                                                                                                      ctGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTGCGCTTCGGCGTCGTTg           >  1:290049/1‑150 (MQ=255)                                                                                                                           cTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTGCGCTTCGGCGTCGTTGCGGGt      >  1:500070/1‑150 (MQ=255)                                                                                                                               gcATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAgt                              <  1:538098/122‑1 (MQ=255)                                                                                                                               gcATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAgt                              >  2:538098/1‑122 (MQ=255)                                                                                                                               gcATCGCTGGGGCGAGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTGCGCTTCGGCGTCGTTGCGGGTGGGc  >  2:578927/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                 TGTTGCTGCAGGTCGTCGACCAAGGACTGGCTATCGCTGTCCAGTGTGTCGCGATGCTGGGCCAGCAGGTCGAGGGCGTGGGTCAGTTCAGTGCTGATCTGTGCACACCAGCGCTCGCTGTCCTGCGCATCGCTGGGGCGCGGCTGGAAGGCCGGGTCTTCGGTGGGTGCGGCCAGCAGCAGGTGCATCTCGCCCAGGCGCTGGCCAAGCAAGGCGGCAAAGCCGCTGAGTTCGGCCAATGCGTCAGTGTGCGCTTCGGCGTCGTTGCGGGTGGGC  >  NC_002947/4580686‑4580961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.