New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5165972 =	20 (0.860)	3 (0.140)	3/240	NT	14.0%	coding (1956/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	5166024 =	18 (0.820)					coding (1904/3906 nt)	hrpA	ATP‑dependent helicase HrpA

CTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCACGGCAAATCAG  >  NC_002947/5165828‑5166121                                                                                                                                                 |                                                                                                                                                      cttGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGaa                                                                                                                                                  >  1:429472/1‑150 (MQ=255)   tgctaaGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTAGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCAAAGATGGATGCACCCAGAAgc                                                                                                                                                <  1:116837/145‑1 (MQ=255)                ggccAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGgc                                                                                                                                   >  2:58058/1‑150 (MQ=255)                    aGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGccc                                                                                                                               <  1:519530/150‑1 (MQ=255)                            gATCCAGTCCGGCTCGATCCTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTc                                                                                                                       >  2:237446/1‑150 (MQ=255)                                  gTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCctc                                                                                                                 >  1:53993/1‑150 (MQ=255)                                        cTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGt                                                                                                           >  2:3084/1‑150 (MQ=255)                                              cTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTg                                                                                                     <  2:268005/150‑1 (MQ=255)                                               ctgatttgccgtgacctgcagctgacggtgaacaaggaaccgaccgattaccagaagctgcacaaggcaatcctcagcgggctgctcagccagattggCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTgg                                                                                                    >  2:329515‑M1/99‑150 (MQ=255)                                                    caccaTGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAAt                                                                                               >  1:402669/1‑150 (MQ=255)                                                        cgtgaccggcagctgacggtgaacaaggaaccgaccgattaccagaagctgcacaaggcaatcctcagcgggctgctcagccagattggCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTgg                                                                                           >  2:37‑M1/90‑150 (MQ=255)                                                          tgacctgcagctgacggtgaacaaggaaccgaccgattaccagaagctgcacaaggcaatcctcagcgggctgctcagccagattggCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCt                                                                                         >  2:62089‑M1/88‑150 (MQ=255)                                                                         ggtggtTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAg                                                                          <  2:348556/150‑1 (MQ=255)                                                                                      aGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGc                                                             <  1:237446/150‑1 (MQ=255)                                                                                            gCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCtttt                                                               >  2:471154/1‑140 (MQ=255)                                                                                            gCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCCCCTCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCtttt                                                               <  1:471154/142‑3 (MQ=255)                                                                                              aGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTg                                                     <  2:53993/150‑1 (MQ=255)                                                                                                        cACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAAtcggtc                                           <  2:402669/150‑1 (MQ=255)                                                                                                         aCTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAAtcggtcg                                          <  1:3084/150‑1 (MQ=255)                                                                                                               ggCGCTTGCGCCCCAGGCCCGAAGATGTATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCt                                    >  1:388980/1‑150 (MQ=255)                                                                                                                    ttGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCCGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTc                               >  1:521584/1‑150 (MQ=255)                                                                                                                        gcCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCg                           >  2:498780/1‑150 (MQ=255)                                                                                                                         cgccAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGt                          <  2:430612/148‑1 (MQ=255)                                                                                                                                               aCCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCACGGCAAATc    >  2:264646/1‑150 (MQ=255)                                                                                                                                                 CCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCACGGCAAATCAg  <  1:360098‑M1/150‑1 (MQ=255)                                                                                                                                                 CCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCCCACATATGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCACGGCAAATCAg  <  1:413269‑M1/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                      CTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCAATCTGGCTGAGCAGCCCGCTGAGGATTGCCTTGTGCAGCTTCTGGTAATCGGTCGGTTCCTTGTTCACCGTCAGCTGCAGGTCACGGCAAATCAG  >  NC_002947/5165828‑5166121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.