New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5594143 =	25 (1.070)	3 (0.170)	3/198	NT	14.1%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594236 =	17 (0.940)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGC  >  NC_002947/5593994‑5594291                                                                                                                                                      |                                                                                                                                                     ctcgatgaagatcacccaggaagtgcgtgagtacgctgccaagatcgaggccgtggatgtgacggtcgagcaaggcatgcgtgagcaggccgagcggttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcacctta                                                                                                                                                      <  1:94413‑M1/1‑1 (MQ=255)   tCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACaccacc                                                                                                                                                    <  1:192931/150‑1 (MQ=255)   tCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACaccacc                                                                                                                                                    <  1:393513/150‑1 (MQ=255)     atgaagatcacccaggaagtgcgtgagtacgctgacaagatcgaggccgtggatgtgacggtcgagcaatggatgcgtgcgcacgccgatcggttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCt                                                                                                                                                  <  1:293256‑M1/5‑1 (MQ=255)     aGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCt                                                                                                                                                  >  2:582955/1‑150 (MQ=255)       gCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCtgt                                                                                                                                                >  2:31375/1‑150 (MQ=255)       gCCGATGCCGAGGAAAAACCACATTGAAAACAGGTCGCGAGCACCGAAAATGCTCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCTTGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCtgt                                                                                                                                                <  1:583107/150‑1 (MQ=255)              ccGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCg                                                                                                                                         <  1:209187/150‑1 (MQ=255)              acccaggaagtgcgtgagtacgctgccaagatcgaggccgtggatgtgacggtcgagcaaggcatgcgtgagcaggccgagcggttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCTGTGGGAGCg                                                                                                                                         <  1:307486‑M1/14‑1 (MQ=255)                           acaGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCcgcgg                                                                                                                            >  1:386816/1‑149 (MQ=255)                            tgagtacgctgccaagatcgaggccgtggatgtgacggtcgagcaaggcatgcgtgagcaggccgagcggttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGaa                                                                                                                           >  1:197750‑M1/123‑150 (MQ=255)                            tgagtacgctgccaagatcgaggccgtggatgtgacggtcgagcaaggcatgcgtgagcaggccgagcggttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGaa                                                                                                                           >  2:198415‑M1/123‑150 (MQ=255)                             aGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGaag                                                                                                                          >  1:341429/1‑149 (MQ=255)                                         tCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGcc                                                                                                              >  1:391822/1‑150 (MQ=255)                                          cgcgAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCAGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCg                                                                                                             <  1:502068/150‑1 (MQ=255)                                                cACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCa                                                                                                       <  2:391822/150‑1 (MQ=255)                                                           cgcTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGc                                                                                               <  2:209953/147‑1 (MQ=255)                                                           cgcTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGc                                                                                               >  1:209953/1‑147 (MQ=255)                                                                   gATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGAAGGAGTGATGTTAAGTGGCATACAACAACCTGTGGGAGCGGGCTTGCGCGCGAACAACGGCAAAGCCGGTGACATGCATCGCAGTgcttgctt                                                                                    >  2:195903/1‑150 (MQ=255)                                                                        ggATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGCTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                               <  2:419073/150‑1 (MQ=255)                                                                        aaggcatgcgtgagcaggccgagcggttccgccaggaaggcagccagctgtacaacaaactctagagctggacaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                               >  1:318831‑M1/79‑150 (MQ=255)                                                                                               tggctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCcaca                                                              >  1:217132/1‑144 (MQ=255)                                                                                               tggctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCcaca                                                              <  2:217132/144‑1 (MQ=255)                                                                                                  ttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTcgc                                                                                 <  1:163509‑M1/70‑1 (MQ=255)                                                                                                  ttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTcgc                                                                                 >  2:163509‑M1/53‑122 (MQ=255)                                                                                                   tggGTGATTTTATGGTCATATCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTTGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGTCAAGCCCGCTCCCACAGTGTAAGGtg                                                    <  1:195903/150‑1 (MQ=37)                                                                                                          tGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGt                                             >  2:293256/1‑150 (MQ=255)                                                                                                           gtcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGtt                                            <  1:421712/150‑1 (MQ=255)                                                                                                             catggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                          <  1:517604/150‑1 (MQ=255)                                                                                                                    atgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtg                                   <  1:352823/150‑1 (MQ=255)                                                                                                                      gTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                 <  2:411959/150‑1 (MQ=255)                                                                                                                              gAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgct                                                  <  1:168018/125‑1 (MQ=255)                                                                                                                              gAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgct                                                  >  2:168018/1‑125 (MQ=255)                                                                                                                                     gTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGcc                  >  2:517285/1‑150 (MQ=255)                                                                                                                                           tGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTg            >  2:307486/1‑150 (MQ=255)                                                                                                                                             gCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGATCATAGGTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc          >  1:433680/1‑150 (MQ=25)                                                                                                                                                   accaccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGTACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTATAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAAcc    <  1:582955/150‑1 (MQ=255)                                                                                                                                                     caccCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCAAAGCCGGTGCCATGAAGCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGCCTTTGTGGTACAGCTTGGCACCTTCCTTGCGGAACCGc  >  2:100310/1‑150 (MQ=25)                                                                                                                                                     caccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGc  >  2:94413/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGC  >  NC_002947/5593994‑5594291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.