New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5594143 =	25 (1.070)	3 (0.170)	3/198	NT	14.1%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594236 =	17 (0.940)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

TGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCGAG  >  NC_002947/5594092‑5594384                                                                                                                                                  |                                                                                                                                                     tggGTGATTTTATGGTCATATCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTTGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGTCAAGC‑CCGCTCCCACAGTGTAAGGtg                                                                                                                                                 <  1:195903/150‑1 (MQ=37)        tGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGt                                                                                                                                          >  2:293256/1‑150 (MQ=255)         gtcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGtt                                                                                                                                         <  1:421712/150‑1 (MQ=255)           catggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                                                       <  1:517604/150‑1 (MQ=255)                  atgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtg                                                                                                                                <  1:352823/150‑1 (MQ=255)                    gTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                                                                                                              <  2:411959/150‑1 (MQ=255)                            gAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGtgct                                                                                                                                               <  1:168018/125‑1 (MQ=255)                            gAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGtgct                                                                                                                                               >  2:168018/1‑125 (MQ=255)                                   gTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGcc                                                                                                               >  2:517285/1‑150 (MQ=255)                                         tGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTg                                                                                                         >  2:307486/1‑150 (MQ=255)                                           gCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGATCATAGGTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc                                                                                                       >  1:433680/1‑150 (MQ=25)                                                 accaccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGTACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTATAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAAcc                                                                                                 <  1:582955/150‑1 (MQ=255)                                                   caccCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCAAAGCCGGTGCCATGAAGCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGCCTTTGTGGTACAGCTTGGCACCTTCCTTGCGGAACCGc                                                                                               >  2:100310/1‑150 (MQ=25)                                                   caccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGc                                                                                               >  2:94413/1‑150 (MQ=255)                                                      CCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                                                            <  2:97160‑M1/150‑1 (MQ=255)                                                        TGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGc                                                                                          >  2:386816‑M1/1‑150 (MQ=255)                                                                 GGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACg                                                                                 >  1:517285‑M1/1‑150 (MQ=255)                                                                    CTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCAt                                                                              >  1:31375‑M1/1‑150 (MQ=255)                                                                          ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGTCCAGCTCTAGAGTTTGTTGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCtt                                                                         >  1:318831‑M2/73‑150 (MQ=255)                                                                            gcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGaa                                                                                                   <  1:163509‑M2/52‑1 (MQ=255)                                                                            gcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGaa                                                                                                   >  2:163509‑M2/71‑122 (MQ=255)                                                                             GAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTc                                                                     >  1:97160‑M1/1‑150 (MQ=255)                                                                                   cGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGt                                                               >  2:92226/1‑150 (MQ=255)                                                                                       aaaGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGATGTTGTGGTACAGCTTGCTGACTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTcaca                                                           >  1:74769/1‑150 (MQ=255)                                                                                        aaGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACAt                                                          >  2:21840/1‑150 (MQ=255)                                                                                                                cttgcttCCCGCGTAAGCACCGC‑CCCACACCGCAACGTGATGGGGTGTAGGCTTTGTGGTGCGGGTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGt                                  >  2:466848/1‑150 (MQ=255)                                                                                                                   gcttCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTg                                                                                                         <  2:186580/76‑1 (MQ=255)                                                                                                                   gcttCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTg                                                                                                         >  1:186580/1‑76 (MQ=255)                                                                                                                      ttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCa                             >  2:198415‑M2/29‑150 (MQ=255)                                                                                                                      ttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCa                             >  1:197750‑M2/29‑150 (MQ=255)                                                                                                                                    cgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGt               <  1:307486‑M2/136‑1 (MQ=255)                                                                                                                                             agggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGATCGGCGTGCGCACGCATCCATTGCTCGACCGTCACATCCACGGCCTCGATCTTGTCAGCGTACTCACGCACTTCCTGGGTGATCTTCAt      <  1:293256‑M2/145‑1 (MQ=255)                                                                                                                                                 tAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCGAg  <  1:94413‑M2/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGC‑CCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCGAG  >  NC_002947/5594092‑5594384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.