New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 6006595 = | 12 (0.510) | 7 (0.420) | 7/182 | NT | 59.4% | intergenic (+7/+92) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
? | NC_002947 | 6006679 = | 1 (0.060) | intergenic (+91/+8) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
CCGAATACGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCC > NC_002947/6006446‑6006664 | ccGAATACGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTa > 1:510332/1‑150 (MQ=255) tACGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGc < 2:550937/150‑1 (MQ=255) cagcggcatggattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggacttgccgaatgtgttaatccggccgcgtctttgatcacctgcACCGGc > 1:423786‑M1/145‑150 (MQ=255) ggCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCctc > 2:563820/1‑150 (MQ=255) attactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCggg > 2:351168‑M1/134‑150 (MQ=255) tacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgattacctgcACCGGCCTCTTCGCGGGCTCGc > 2:97492‑M1/129‑150 (MQ=255) cgcgAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGccc > 2:144444/1‑150 (MQ=255) tggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCGAGCCCGc > 1:170110‑M1/125‑150 (MQ=255) gTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCcac > 2:327799/1‑150 (MQ=255) ttCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCcaca < 2:510332/150‑1 (MQ=255) cAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt < 1:450756/150‑1 (MQ=255) aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg < 1:446509/150‑1 (MQ=255) agcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg > 1:123295‑M1/95‑150 (MQ=255) tACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg > 1:76003/1‑148 (MQ=255) tACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg < 2:76003/148‑1 (MQ=255) cAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGc < 1:563820/150‑1 (MQ=255) ggATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGTCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCgg < 1:12216/150‑1 (MQ=255) tGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGccc < 1:144444/150‑1 (MQ=255) gaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg < 1:558233‑M1/55‑1 (MQ=255) gaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg > 2:558233‑M1/60‑114 (MQ=255) atggatttgccggatgtggaaatcctgctgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGa > 2:442565‑M1/48‑105 (MQ=255) atggatttgccggatgtggaaatcctgctgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGAACTGTGGGa < 1:442565‑M1/58‑1 (MQ=255) ccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCgg < 2:292557‑M1/62‑1 (MQ=255) ccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCgg > 1:292557‑M1/39‑100 (MQ=255) | CCGAATACGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCC > NC_002947/6006446‑6006664 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |