| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6121904 = | 29 (1.240) | 5 (0.230) | 5/242 | NT | 16.0% | coding (302/1386 nt) | PP_5371 | rubredoxin/rubredoxin reductase |
| ? | NC_002947 | 6121950 = | 25 (1.130) | coding (256/1386 nt) | PP_5371 | rubredoxin/rubredoxin reductase | |||||
AATGCCAAGCCTCTGTTCGATCGCCAGCGGCGTTTCGGTGGCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCTGGATAACCGGCGCGGTAGCCACTGCTGCGATCGGGGTGCTGAGTTC > NC_002947/6121759‑6122049 | ctatgccctgagtgcaaggtcgtcaaagccgactttgaaatgatcgaactcagcaccccgatcgcagcagtggctaccgcgccggttatccaggcgcaaccactggttgccgctcgtcccgcccaaccggtggtcatcatcggtaGCGGc > 2:38963‑M1/146‑150 (MQ=255)ctatgccctgagtgcaaggtcggcaaagccgactttgaaatgatcgaactcagcaccccgatcgcagcagtggctaccgcgccggttatccaggcgcaaccactggttgccgctcgtcccgcccaaccggtggtcatcatcggtaGCGGc > 1:345823‑M1/146‑150 (MQ=255) tatgccctgagtgcaaggtcggcaaagccgactttgaaatgatcgaactcagcaccccgatcgcagcagtggctaccgcgccggttatccaggcgcaaccactggttgccgctcgtcccgcccaaccggtggtcatcatcggtaGCGGcc > 1:186735‑M1/145‑150 (MQ=255) gCCAAGCCTCTGTTCGATCGCCAGCGGCGTTTCGGTGGCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑tt > 2:280175/1‑150 (MQ=255) ttCGATCGCCAGTGGCGTTTCGGTGGTCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTAGGAATAAAGATGGCCCGACGCCTGGGTCAGTGCGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCtg < 1:400737/150‑1 (MQ=255) gATCGCCAGCGGCGTTTCGGTGGCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGc < 2:128445/150‑1 (MQ=255) gcgTTTCGGTGGCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGc < 1:203998/150‑1 (MQ=255) tttCGGTGGCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCgg > 1:23069/1‑150 (MQ=255) ttCGGTGGCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTAAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGc > 1:531504/1‑150 (MQ=255) ggCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGTCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGcc < 2:368157/150‑1 (MQ=255) tgatcgaactcagcaccccgatcgcagcagtggctaccgcgccggttatccaggcgcaaccactggttgccgctcgtcccgcccaaccggtggtcatcatcggtaGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCg > 2:552936‑M1/106‑150 (MQ=255) gCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCg > 2:210573/1‑150 (MQ=255) gatcgaactcagcaccccgatcgcagcagtggctaccgcgccggttatccaggcgcaaccactggttgccgctcgtcccgcccaaccggtggtcatcatcggtaGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGc < 1:509695‑M1/46‑1 (MQ=255) ctcagcaccccgatcgcagcagtggctaccgcgccggttatccaggcgcaaccactggttgccgctcgtcccgcccaaccggtggtcatcatcggtaGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCgat > 2:509695‑M1/98‑150 (MQ=255) ggcggTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCgatgat < 1:528046/150‑1 (MQ=255) cccTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATACAGAAAGCCGAATTCTTGGGTTAGTACGCTAAAAGCGAACGGCGGGGGTGCC‑‑‑‑‑GTGCTCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGt > 2:70474/1‑150 (MQ=255) ccTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGtt < 1:210573/150‑1 (MQ=255) aTAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCCGAGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTCCCGCTGATGGACACCGGTTGTGTGCGATGACCGGCaa > 1:167145/1‑150 (MQ=255) cgcgGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAg < 2:306657/150‑1 (MQ=255) gcgGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGt < 1:238481/150‑1 (MQ=255) cgGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTg < 1:280175/150‑1 (MQ=255) gaaaTAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTgcgc > 2:547414/3‑150 (MQ=255) aaTAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCt > 1:479084/1‑150 (MQ=255) aTAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGc > 1:42549/1‑120 (MQ=255) aTAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGc < 2:42549/120‑1 (MQ=255) cactggttgccgctcgtcccgcccaaccggtggtcatcatcggtaGCGGCCATGCCTTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATgg > 2:349079‑M1/46‑92 (MQ=255) cactggttgccgctcgtcccgcccaaccggtggtcatcatcggtaGCGGCCATGCCTTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATgg < 1:349079‑M1/47‑1 (MQ=255) ccGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCgg > 1:497569/1‑103 (MQ=255) ccGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCgg < 2:497569/103‑1 (MQ=255) cGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCTGGATAACCGgcgc < 2:531504/150‑1 (MQ=255) cTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCTGGATAACCGGCGCGGTAGc > 2:75418/1‑150 (MQ=255) gAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGAACACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCTGGATAACCGGCGCGGTAGCCACTGCTGCGATCg < 1:75418/150‑1 (MQ=255) tctcCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGACTGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCTGGATAACCGGCGCGGTAGCCACTGCTGCGATCgggg > 2:151450/1‑150 (MQ=255) ccAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCTGGATAACCGGCGCGGTAGCCACTGCTGCGATCGGGGTGc > 2:448978/1‑150 (MQ=255) cAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGAATACCGGTTGGGAGGGACGAGCGGAAACCAGTGGTTGCGCCTGGATAACCGTCGCGGTAGACACTGCTTCGATCCGGGTGCt > 2:38129/1‑150 (MQ=255) aaCTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGatgatg < 2:235332/66‑1 (MQ=255) aaCTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGatgatg > 1:235332/1‑66 (MQ=255) cGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGATGCCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCTGGATAACCGGCGCGGTAGCCACTGCTGCGATCGGGGTGCTGAGTTc < 1:38129/150‑1 (MQ=255) | AATGCCAAGCCTCTGTTCGATCGCCAGCGGCGTTTCGGTGGCCAGGGCTGCGGCGGTGCGCCCCTGAGCCAGGGCGATGGATAGCGCGGGCTTGGAATAAAGATGGCCCGACTCCTGGGTCAGTACGCGAATCTCCAACTGCGGGGCGGCC‑‑‑‑‑TTGCGCAGGGCCTGTGCCAGGCCGTAGCCGGCATGGCCGCTACCGATGATGACCACCGGTTGGGCGGGACGAGCGGCAACCAGTGGTTGCGCCTGGATAACCGGCGCGGTAGCCACTGCTGCGATCGGGGTGCTGAGTTC > NC_002947/6121759‑6122049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |