| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2653644 = | 19 (0.820) | 4 (0.200) | 4/222 | NT | 19.7% | intergenic (+40/‑85) | PP_2325/PP_2326 | 2‑dehydropantoate 2‑reductase/universal stress protein |
| ? | NC_002947 | 2653686 = | 16 (0.790) | intergenic (+82/‑43) | PP_2325/PP_2326 | 2‑dehydropantoate 2‑reductase/universal stress protein | |||||
GAAATGCTGTACCAAGCGCTGAGTTTCATCGACTGCAGCGACCGGCCGGCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCGGTGTCTACGCCCCTTTCGTGATGCAACATGCGCTGGCCCTGGCGCGCACGTTCGGTGCCGAGTTGT > NC_002947/2653551‑2653828 | acgaaaggggcgtagacaccgaggtcggtggcgtacagcatggagcggatcattcgacctcctcgactgccgcagcggcagagcaagcttcagcttagcagcgcgccggacggcaaagcgagcgtccggcgcgctgctAAGCTGAAGCtt < 1:292161‑M2/12‑1 (MQ=255) ccAAGCGCTGAGTTTCATCGACTGCAGCGACCGGCCGGCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCg > 1:50509/1‑150 (MQ=255) aaGCGCTGAGTTTCATCGACTGCAGCGACCGGCCGGCCGGCGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGc > 1:204474/1‑150 (MQ=255) gTTTCATCGACTGCAGCGACCGGCCGGCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCgagga < 2:50509/150‑1 (MQ=255) tttCATCGACTGCAGCGACCGGCCGGCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCgaggag > 2:136141/1‑150 (MQ=255) cggCAGCGACCGGCCGTCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGa > 2:316584/3‑150 (MQ=255) tGCAGCGACCGGCCGGCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGAt < 1:136141/150‑1 (MQ=255) gCAGCGACCGGCCGGCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATc > 2:52362/1‑150 (MQ=255) aGCGACCGGCCGGCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCg > 1:35301/1‑150 (MQ=255) cggccggcCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCAt < 1:52362/150‑1 (MQ=255) attcgacctcctcgactgccgcagcggcagagcaagcttcagcttAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGc < 2:515365‑M1/46‑1 (MQ=255) attcgacctcctcgactgccgcagcggcagagcaagcttcagcttAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGc > 1:515365‑M1/46‑91 (MQ=255) ccTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGaa < 2:583964/130‑1 (MQ=255) ccTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGaa > 1:583964/1‑130 (MQ=255) cTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACg > 2:499699/1‑150 (MQ=255) ggAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTc < 1:499699/149‑1 (MQ=255) cTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCg < 1:581072/146‑1 (MQ=255) cTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCg > 2:581072/1‑146 (MQ=255) cggGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCGGTGTCTACGc < 2:204474/150‑1 (MQ=255) aagcttcagcttAGCAGCGCGCCGGACGCTCGCTTTGC‑‑‑CGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCGGTGTCTACGCCCCTTTCGt < 1:292161‑M1/138‑1 (MQ=255) gcttagcagcgcgccggacgctcgctttgccgtccggcgcgctgctAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAAt > 1:515365‑M2/47‑91 (MQ=255) gcttagcagcgcgccggacgctcgctttgccgtccggcgcgctgctAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAAt < 2:515365‑M2/45‑1 (MQ=255) GCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCGGTGTCTACGCCCCTTTCGTGATGCAACATGCGCTGGccc < 1:554024‑M1/150‑1 (MQ=255) G‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGATCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCGGTGTCTACGCCCCTTTCGTGATGCAACATGCGCTGACCCTGgcgcg < 1:582825‑M1/150‑1 (MQ=255) tcgctttgccgtccggcgcgctgctAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCGGTGTCTACGCCCCTTTCGTGATGCAACATGCGCTGGCCCTGGCGCGCa > 2:427603‑M2/26‑150 (MQ=255) cgctgctAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCGGTGTCTACGCCCCTTTCGTGATGCAACATGCGCTGGCCCTGGCGCGCACGTTCGGTGCCGAGTTGt < 1:316584‑M2/143‑1 (MQ=255) | GAAATGCTGTACCAAGCGCTGAGTTTCATCGACTGCAGCGACCGGCCGGCCTGAGGGTGGCCGAGGCTTCGGCGGGGCCCTCCAGCCCACGGCAGCAGCGCGCCGGACG‑‑‑GCAAAGCGAGCGTCCGGCGCGCTGCTAAGCTGAAGCTTGCTCTGCCGCTGCGGCAGTCGAGGAGGTCGAATGATCCGCTCCATGCTGTACGCCACCGACCTCGGTGTCTACGCCCCTTTCGTGATGCAACATGCGCTGGCCCTGGCGCGCACGTTCGGTGCCGAGTTGT > NC_002947/2653551‑2653828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |