New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5911055 =	23 (0.990)	4 (0.180)	4/246	NT	15.0%	coding (1159/1359 nt)	spuB	glutamylpolyamine synthetase
	?	NC_002947	5911078 =	23 (1.020)					coding (1136/1359 nt)	spuB	glutamylpolyamine synthetase

TGGTAGCGACATACCCGGTGATGAATTTCTTGCCCAGGTACTGCACCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCGGTACGCGCAGGCCGACGGTGCGGTTTTC  >  NC_002947/5910929‑5911226                                                                                                                                                      |                                                                                                                                                     tGGTAGCGACATACCCGGTGATGAATTTCTTGCCCAGGTACTGCACCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCt                                                                                                                                                      <  1:90503/150‑1 (MQ=255)                cGGTGATGAATTTCTTGCCCAGGTACTGCACCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCa                                                                                                                                       >  2:379606/1‑150 (MQ=255)                  gTGATGAATTTCTTGCCCAGGTACTGCACCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATg                                                                                                                                     >  2:13013/1‑150 (MQ=255)                          tttCTTGCCCAGGTACTGCACCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTa                                                                                                                             >  2:350626/1‑150 (MQ=255)                                  ccAGGTACTGCACCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCcacaca                                                                                                                     >  1:101901/1‑150 (MQ=255)                                            cACCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGCCGCAGATTGCGCCGTTCGTAGCCACGGCCCTGCACTGGAGCGCTGCCCTCGATACCTGCGACCATGCCGATGAAGCGACAAAGTAGGCTggc                                                                                                           >  2:107284/1‑150 (MQ=255)                                             aCCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTggcg                                                                                                          >  1:76550/1‑150 (MQ=255)                                               cAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTggc                                                                                                           <  1:130661/147‑1 (MQ=255)                                               cAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTggc                                                                                                           >  2:130661/1‑147 (MQ=255)                                                         acgccaacccgtacctggccatcgccgccagcctactgtgtggctacatcggcatggtcgaaggtatcgaGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTc                                                                                                                                            >  2:570941‑M1/71‑104 (MQ=255)                                                         acgccaacccgtacctggccatcgccgccagcctactgtgtggctacatcggcatggtcgaaggtatcgaGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTc                                                                                                                                            <  1:570941‑M1/34‑1 (MQ=255)                                                           gTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTa                                                                                            <  1:379606/150‑1 (MQ=255)                                                                      gTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGt                                                                                 >  2:400610/1‑150 (MQ=255)                                                                              tcgccgccagcctactgtgtggctacatcggcatggtcgaaggtatcgaGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGa                                                                                                                                          >  1:145941‑M1/50‑85 (MQ=255)                                                                              tcgccgccagcctactgtgtggctacatcggcatggtcgaaggtatcgaGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGa                                                                                                                                          <  2:145941‑M1/36‑1 (MQ=255)                                                                                          gTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTtc                                                             >  1:546639/1‑150 (MQ=255)                                                                                           tCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTtct                                                            >  2:77086/1‑150 (MQ=255)                                                                                             aGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCCGGCCGTtcgcc                                                          >  2:284966/1‑147 (MQ=255)                                                                                               gggCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGCATGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGAc                                                        <  1:350626/150‑1 (MQ=255)                                                                                                    ggCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGcc                                                   <  2:546639/150‑1 (MQ=255)                                                                                                          ggTTGCGGCGTTCGTAGCCAATGTCGTTCACTGGCTCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCttt                                             <  1:107284/150‑1 (MQ=37)                                                                                                            ttGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAg                                                                                                                            <  1:431892/69‑1 (MQ=255)                                                                                                            ttGCGGCGTTCGTAGCAACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAg                                                                                                                            >  2:431892/1‑69 (MQ=255)                                                                                                                  tcgaaggtatcgaggccagcgcgccagtgcagggccTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGa                                                                                                      <  2:145941‑M2/49‑1 (MQ=255)                                                                                                                  tcgaaggtatcgaggccagcgcgccagtgcagggccTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGa                                                                                                      >  1:145941‑M2/37‑85 (MQ=255)                                                                                                                    gaaggtatcgaggccagcgcgccagtgcagggccTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGt                                                                                 <  1:570941‑M2/70‑1 (MQ=255)                                                                                                                    gaaggtatcgaggccagcgcgccagtgcagggccTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGt                                                                                 >  2:570941‑M2/35‑104 (MQ=255)                                                                                                                         aGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCg                              <  1:13013/150‑1 (MQ=255)                                                                                                                          gCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCgg                             <  1:77086/150‑1 (MQ=255)                                                                                                                           ccACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCGGt                            >  2:268922/1‑150 (MQ=255)                                                                                                                             aCGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCGGTAc                          >  1:297617/1‑150 (MQ=255)                                                                                                                                    tGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCGGTACGCGCAgg                   <  1:400610/150‑1 (MQ=255)                                                                                                                                               gcTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCGGTACGCGCAGGCCGACGGTGCg        <  1:321717/150‑1 (MQ=255)                                                                                                                                                 tGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCGGTACGCGCAGGCCGACGGTGCGGt      <  2:76550/150‑1 (MQ=255)                                                                                                                                                   gccTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCGGTACGCGCACGCCGACGGGGCGGttt    >  2:417514‑M2/4‑150 (MQ=255)                                                                                                                                                     cTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGAGGTTCTCCAAGCGCCGGATTCGGAGGAAGGCTAGCGGGAAGGGCAGGCCTACGGGGCGGgtttt  >  2:67581/1‑149 (MQ=18)                                                                                                                                                      |                                                                                                                                                     TGGTAGCGACATACCCGGTGATGAATTTCTTGCCCAGGTACTGCACCAGCGCACGGCTGTTTTCCATGCGTTCCAAGGCGTCCTCGATGGTCAGGGGCAGGCGCAGGTTGCGGCGTTCGTAGCCACGGCCCTGCACTGGCGCGCTGGCCTCGATACCTTCGACCATGCCGATGTAGCCACACAGTAGGCTGGCGGCGATGGCCAGGTACGGGTTGGCGTCGGCGCCCGGCAGGCGGTTCTCGACGCGCCGGCTTTGCGGGCCGGCATCCGGTACGCGCAGGCCGACGGTGCGGTTTTC  >  NC_002947/5910929‑5911226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.