| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 3,866,612 | Δ6 bp | coding (305‑310/1020 nt) | PP_3415 ← | LacI family transcriptional regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3866612 | 3866617 | 6 | 18 [0] | [0] 18 | PP_3415 | LacI family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3866611 | 0 (0.000) | 18 (0.710) | 17/270 | 0.6 | 100% | coding (311/1020 nt) | PP_3415 | LacI family transcriptional regulator |
| ? | NC_002947 | 3866618 = | 0 (0.000) | coding (304/1020 nt) | PP_3415 | LacI family transcriptional regulator | |||||
CACGCCGCTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3866475‑3866611‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGTGCCGAGGCCAGCGCCCGGGCGGCCGG > NC_002947/3866618‑3866747 CACGCCGCTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGTGCCGCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACG > 1:6252/1‑150 CGCTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGC > 2:469136/1‑150 TGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCA > 2:409936/1‑150 TGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATG < 1:409936/150‑1 CCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGC < 2:546416/150‑1 AGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTT < 2:326613/150‑1 CAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGG > 2:168098/1‑142 CAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGG < 1:168098/142‑1 AGGTAATTGCGGATTAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGAC < 1:213000/150‑1 GCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATC > 1:446422/1‑127 GCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATC < 2:446422/127‑1 TTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGTGCCGAGGCC > 1:535707/1‑150 TTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGTGCCGAGGGCAGCGC > 1:531351/1‑150 TTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGT < 1:406794/136‑1 TTCTTCGGCAAGGTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGT > 2:406794/1‑136 GTCGTAATGATAGTTGCCGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGTGCCGAGGCCAGCGCCCGGGCGGCCGG > 1:501755/1‑150 CGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCT < 2:184127/103‑1 CGACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCT > 1:184127/1‑103 CACGCCGCTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3866475‑3866611‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGTGCCGAGGCCAGCGCCCGGGCGGCCGG > NC_002947/3866618‑3866747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |