| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 3,866,612 | Δ6 bp | coding (305‑310/1020 nt) | PP_3415 ← | LacI family transcriptional regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3866612 | 3866617 | 6 | 18 [0] | [0] 18 | PP_3415 | LacI family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3866611 | 0 (0.000) | 18 (0.710) | 17/270 | 0.6 | 100% | coding (311/1020 nt) | PP_3415 | LacI family transcriptional regulator |
| ? | NC_002947 | 3866618 = | 0 (0.000) | coding (304/1020 nt) | PP_3415 | LacI family transcriptional regulator | |||||
CACGCCGCTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGTGCCGAGGCCAGCGCCCGGGC > NC_002947/3866475‑3866741 | cACGCCGCTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGTGCCGCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacg > 1:6252‑M1/1‑137 (MQ=255) cgcTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggc > 2:469136‑M1/1‑132 (MQ=255) tGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgca > 2:409936‑M1/1‑129 (MQ=255) tGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatg < 1:409936‑M1/150‑36 (MQ=255) ccGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggc < 2:546416‑M1/150‑38 (MQ=255) aGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagtt < 2:326613‑M1/150‑61 (MQ=255) cAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttgg > 2:168098‑M1/1‑80 (MQ=255) cAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttgg < 1:168098‑M1/142‑63 (MQ=255) aGGTAATTGCGGATTAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatcaacaccaccaccgac < 1:213000‑M1/150‑96 (MQ=255) gCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatc > 1:446422‑M1/1‑47 (MQ=255) gCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatc < 2:446422‑M1/127‑81 (MQ=255) ttCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatcaacaccaccaccgactggctgcgtgccgaggcc > 1:535707‑M1/1‑37 (MQ=255) ttcttcGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatcaacaccaccaccgactggctgcgtgccgagggcagcgc > 1:531351‑M1/1‑32 (MQ=255) ttcttcGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatcaacaccaccaccgactggctgcgt < 1:406794‑M1/136‑105 (MQ=255) ttcttcGGCAAGGTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatcaacaccaccaccgactggctgcgt > 2:406794‑M1/1‑32 (MQ=255) gTCGTAATGATAGTTGCCGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatcaacaccaccaccgactggctgcgtgccgaggccagcgcccgggcggccgg > 1:501755‑M1/1‑20 (MQ=255) cGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatcaacaccaccaccgactggct < 2:184127‑M1/103‑101 (MQ=255) cGAcctctagcccacgagggcgcatgacctcgtgaatggcctccagggtgtcgatgaacagttggttggacaacgacgggatcaacaccaccaccgactggct > 1:184127‑M1/1‑3 (MQ=255) | CACGCCGCTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGGCGCATGACCTCGTGAATGGCCTCCAGGGTGTCGATGAACAGTTGGTTGGACAACGACGGGATCAACACCACCACCGACTGGCTGCGTGCCGAGGCCAGCGCCCGGGC > NC_002947/3866475‑3866741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |