| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5628645 = | 40 (1.580) | 7 (0.300) | 7/254 | 1.8 | 17.2% | intergenic (‑64/+43) | rlmJ/putP | 23S rRNA (adenine(2030)‑N(6))‑methyltransferase/sodium/L‑proline transporter |
| ? | NC_002947 | 5628678 = | 30 (1.270) | intergenic (‑97/+10) | rlmJ/putP | 23S rRNA (adenine(2030)‑N(6))‑methyltransferase/sodium/L‑proline transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTGAGCAAGCTGGGCAGCCCTTCGCAGACGATGGTCAAGCGCTTCGAAGCGGCTGATGCGGCGTATCACGCCGACAAGTAACACCCGTTGAATTGGCGGCGCCTGCTTTGCGGGTGCCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5628769‑5628645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccaatTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCGGGATGATTTCGTACAACCCGAGG > NC_002947/5628678‑5628826 gatctGCAAGCTGGGCAGCCCTTCGCAGACGATGGTCAAGCGCTTCGAAGCGGCTGATGCGGCGTATCACGCCGACAAGTAACACCCGTTGAATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTG < 1:102329/145‑1 CAAGCTGGGCAGCCCTTCGCAGACGATGGTCAAGCGCTTCGAAGCGGCTGATGCGGCGTATCACGCCGACAAGTAACACCCGTTGAATTGGCGGCACCCGCAAAGCAGACGCCGCCGATTCAACTGGTGTTACTTGTCGGGGTGAcggtt > 2:102329/1‑145 TGGTCAAGCGCTTCGAAGCGGCTGATGCGGCGTATCACGCCGACAAGTAACACCCGTTGGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAA > 1:469833/1‑97 TGGTCAAGCGCTTCGAAGCGGCTGATGCGGCGTATCACGCCGACAAGTAACACCCGTTGGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAA < 2:469833/97‑1 ATTGGCGGCGCCTGCTTTGCGGGTGCCGCCAATTCAACGGGTGTTACTTGTCGGCGT > 1:596925/1‑57 ATTGGCGGCGCCTGCTTTGCGGGTGCCGCCAATTCAACGGGTGTTACTTGTCGGCGT < 2:596925/57‑1 GCGGCGCCTGCTTTGCGGGTGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAA > 1:620323/1‑150 CCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCGGGATGATTTCGTACAA < 2:223031/150‑1 AATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCGGGATGATTTCGTACAACCCGA < 2:584909/150‑1 TTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCGGGATGATTTCGTACAACCCGAGG < 1:354786/150‑1 GGTGAGCAAGCTGGGCAGCCCTTCGCAGACGATGGTCAAGCGCTTCGAAGCGGCTGATGCGGCGTATCACGCCGACAAGTAACACCCGTTGAATTGGCGGCGCCTGCTTTGCGGGTGCCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5628769‑5628645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccaatTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCGGGATGATTTCGTACAACCCGAGG > NC_002947/5628678‑5628826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |