New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2033789 =	5 (0.200)	8 (0.330)	8/262	1.7	57.5%	coding (1227/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	5344023 =	7 (0.290)					coding (1215/1665 nt)	pgi‑II	glucose 6‑phosphate isomerase

CCAACGGCAAGAGCGTGCTGCAAGACGGTACCCCGGTGAAGACCGACACCGGGCCGGTGATCTGGGGCGGCGTGGGCTGCAACGGCCAGCATGCCTACCACCAGTTGCTGCACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGCCTCAACGAAGCA  >  NC_002947/2033641‑2033930                                                                                                                                                     |                                                                                                                                              gttgaggcctttagcgcgcaattcggcttcggcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcacgatgaaatcgGc                                                                                                                                              >  2:322284‑M1/149‑150 (MQ=255)  ttgaggcctttagcgcgcaattcggcttcggcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcacgatgaaatcgGcc                                                                                                                                             <  1:527094‑M1/3‑1 (MQ=255)                                                   ccagcatcggcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcacgatgaaatcgg                                                                                                                                               >  1:113031‑M1/99‑99 (MQ=255)                                                   ccagcatcggcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcacgatgaaatcgg                                                                                                                                               <  2:113031‑M1/1‑1 (MQ=255)                                                                  ggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggccgatttcatcgtGCCGGTGGTGAGc                                                                                                                                   >  2:272754‑M1/84‑96 (MQ=255)                                                                  ggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggccgatttcatcgtGCCGGTGGTGAGc                                                                                                                                   <  1:272754‑M1/13‑1 (MQ=255)                                                                                                                    gggCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAAtt                           <  1:465425/150‑1 (MQ=32)                                                                                                                    gggCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCCGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAAtt                           >  2:113103/1‑150 (MQ=17)                                                                                                                              ttGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTaaa                 >  2:50710/1‑150 (MQ=32)                                                                                                                              ttGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTaaa                 <  1:156048/150‑1 (MQ=32)                                                                                                                               caccaccggcacgatgaaatcgGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCg                                                                                <  2:12962‑M1/64‑1 (MQ=255)                                                                                                                               caccaccggcacgatgaaatcgGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCg                                                                                >  1:12962‑M1/23‑86 (MQ=255)                                                                                                                                  caccggcacgatgaaatcgGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGcc             <  1:475578‑M1/131‑1 (MQ=255)                                                                                                                                    ccggcacgatgaaatcgGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTaaa                 <  2:23072‑M1/127‑1 (MQ=255)                                                                                                                                    ccggcacgatgaaatcgGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTaaa                 >  1:23072‑M1/18‑144 (MQ=255)                                                                                                                                          gATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCAAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGAGCTAAAGGGCTCAACgga     >  1:246089/1‑148 (MQ=12)                                                                                                                                             tgaaatcgGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAACCCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGCCTCAACGAAGCa  >  2:475578‑M1/9‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                              CCAACGGCAAGAGCGTGCTGCAAGACGGTACCCCGGTGAAGACCGACACCGGGCCGGTGATCTGGGGCGGCGTGGGCTGCAACGGCCAGCATGCCTACCACCAGTTGCTGCACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCTGAAGCCGAATTGCGCGCTAAAGGCCTCAACGAAGCA  >  NC_002947/2033641‑2033930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.