New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2033789 =	5 (0.200)	8 (0.330)	8/262	1.7	57.5%	coding (1227/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	5344023 =	7 (0.290)					coding (1215/1665 nt)	pgi‑II	glucose 6‑phosphate isomerase

TGGAATCCAACGGCAAGAGCGTGCTGCAAGACGGTACCCCGGTGAAGACCGACACCGGGCCGGTGATCTGGGGCGGCGTGGGCTGCAACGGCCAGCATGCCTACCACCAGTTGCTGCACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCCGAAGCCGAATTGCGCGCTAAAGGCCTCAAC  >  NC_002947/5343881‑5344170                                                                                                                                               |                                                                                                                                                    tgcttcgttgaggcctttagcgcgcaattcggcttcagcttcctcgcggggtttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcCGATTTCa                                                                                                                                              >  2:475578‑M2/143‑150 (MQ=255)            ggcctttagcgcgcaattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcCGATTTCATCGTGCCggtg                                                                                                                                   <  1:475578‑M2/19‑1 (MQ=255)                tttagcgcgcaattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcCGATTTCATCGTGCCgg                                                                                                                                     >  1:23072‑M2/128‑144 (MQ=255)                tttagcgcgcaattcggcttcagcttcctcgcgggttttgcccagcatcagcgcctggctctgcgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcCGATTTCATCGTGCCgg                                                                                                                                     <  2:23072‑M2/17‑1 (MQ=255)                                                                               cgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcCGATTTCATCGTGCCGgtggtg                                                                                                                                <  2:12962‑M2/22‑1 (MQ=255)                                                                               cgacaggcagttggcgtacagccactggtggtggtcggccaccgggttgaagctcaccaccggcCGATTTCATCGTGCCGgtggtg                                                                                                                                >  1:12962‑M2/65‑86 (MQ=255)                                                                                                                  ctgcACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGgaagccgaa                             >  2:264042/1‑150 (MQ=32)                                                                                                                       ccAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAagccgaagccga                        >  2:407850/1‑150 (MQ=32)                                                                                                                        cAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAgccgaagccgaa                       >  2:43461/1‑150 (MQ=32)                                                                                                                           ggCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCCGAAGCCGAATTg                    >  1:34515/1‑150 (MQ=32)                                                                                                                              aCCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCCGAAGCCGAATTgcgc                 >  2:340507/1‑150 (MQ=32)                                                                                                                                 gctcaccaccggcaCGATGAAATCG‑GCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGcc                                                                   <  1:272754‑M2/82‑1 (MQ=255)                                                                                                                                 gctcaccaccggcaCGATGAAATCG‑GCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGcc                                                                   >  2:272754‑M2/15‑96 (MQ=255)                                                                                                                                 cAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCCGAAGCCGAATTGCGCGCt              >  2:204726/1‑150 (MQ=32)                                                                                                                                       aTTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCCGAAGCCGAATTGCGCGCTAAAGGc        <  1:332107/150‑1 (MQ=32)                                                                                                                                            ggcCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCCGAAGCCGAATTGCGCGCTAAAGGCCTCaa   <  1:527094‑M2/147‑1 (MQ=255)                                                                                                                                             gcCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCCGAAGCCGAATTGCGCGCTAAAGGCCTCAAc  >  2:322284‑M2/3‑150 (MQ=255)                                                                                                                                              cCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCCGATGCTgg                                                    <  2:113031‑M2/98‑1 (MQ=255)                                                                                                                                              cCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCCGATGCTgg                                                    >  1:113031‑M2/2‑99 (MQ=255)                                                                                                                                               |                                                                                                                                                    TGGAATCCAACGGCAAGAGCGTGCTGCAAGACGGTACCCCGGTGAAGACCGACACCGGGCCGGTGATCTGGGGCGGCGTGGGCTGCAACGGCCAGCATGCCTACCACCAGTTGCTGCACCAGGGCACCCAGTTGATTCCGGCCGATTTCATCGTGCCGGTGGTGAGCTTCAACCCGGTGGCCGACCACCACCAGTGGCTGTACGCCAACTGCCTGTCGCAGAGCCAGGCGCTGATGCTGGGCAAAACCCGCGAGGAAGCCGAAGCCGAATTGCGCGCTAAAGGCCTCAAC  >  NC_002947/5343881‑5344170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.