New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5537079 =	30 (1.180)	5 (0.250)	5/218	2.0	18.9%	intergenic (+8/+95)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
	?	NC_002947	5537155 =	19 (0.930)					intergenic (+84/+19)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
Rejected: Frequency below/above cutoff threshold.

ACGAGGCGTCACATGGCGTGACCTACGCGCAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAG  >  NC_002947/5536932‑5537228                                                                                                                                                    |                                                                                                                                                      gcgcgcctgagaaagaaaccgaagtgaagttcgccacttccaagctggaagccggtggtgactacagcttcttctgcaccttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCt                                                                                                                                                     >  1:347178‑M1/148‑150 (MQ=255)        tgagaaagaaaccgaagtgaagttcgacacttccaagctggaagccggtggtgactacagcttcttctgcaccttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAg                                                                                                                                              <  1:336514‑M1/10‑1 (MQ=255)             aTGGCGTGGCCGACGCGCATATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGt                                                                                                                                         >  2:321292/1‑150 (MQ=255)              agaaaccgaagtgaagttcgacacttccaagctggaagccggtggtgactacagcttcttctgcaccttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGtt                                                                                                                                        <  2:277507‑M1/16‑1 (MQ=255)                    gACCTACGCGCAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCcg                                                                                                                                  >  2:56517/1‑150 (MQ=255)                         tgaagttcgacacttccaagctggaagccggtggtgactacagcttcttctgcaccttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGTTCACCCGCGAAt                                                                                                                             >  1:218056‑M1/124‑150 (MQ=255)                             gcAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGa                                                                                                                         >  1:374847/1‑150 (MQ=255)                                     aTGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAAc                                                                                                                 >  1:85510/1‑150 (MQ=255)                                          ttCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTGGACATCATCGTCGCCACCTACAGCAAGACCCAGCACAAGGGCGAACTGACGTTGGCTCCTTGATAAGTGGCCTGCAGGAGCGGGGTCACCAGCCAATACGAGGTTGAACCCAcc                                                                                                            >  1:408005/1‑150 (MQ=255)                                          ttCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCAcc                                                                                                            >  1:220399/1‑150 (MQ=255)                                                       gtggtgactacagcttcttctgcaccttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCggg                                                                                                                                          <  1:281755‑M1/14‑1 (MQ=255)                                                       gtggtgactacagcttcttctgcaccttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCggg                                                                                                                                          >  2:281755‑M1/94‑107 (MQ=255)                                                       gtggtgactacagcttcttctgcaccttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                               >  1:277507‑M1/94‑150 (MQ=255)                                                       aGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCGCCTACCGCAAGACCCAGCAAAAGAGCGAGGCCCGCCTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                               <  1:264070/150‑1 (MQ=38)                                                        gCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCggg                                                                                              >  2:581901/1‑150 (MQ=255)                                                             ttGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAAc                                                                                         <  1:96283/150‑1 (MQ=255)                                                                  cAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGa                                                                                                                                               >  1:374287/1‑91 (MQ=255)                                                                  cAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGa                                                                                                                                               <  2:374287/91‑1 (MQ=255)                                                                           ttCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAggg                                                                           >  1:488762/1‑150 (MQ=255)                                                                              gACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACTCATTCGCgg                                                                                               >  2:102459/1‑127 (MQ=255)                                                                              gACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCgg                                                                                               <  1:102459/127‑1 (MQ=255)                                                                                cttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGTTCACCCGCGaa                                                                                                                              <  1:521570‑M1/26‑1 (MQ=255)                                                                                cttcccgggccacatctcgatgatgaaaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGTTCACCCGCGaa                                                                                                                              >  2:521570‑M1/69‑94 (MQ=255)                                                                                        tcgCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGcc                                                              >  1:177684/1‑150 (MQ=255)                                                                                                tACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                 >  2:545579/1‑139 (MQ=255)                                                                                                tACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCCCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                 <  1:545579/139‑1 (MQ=255)                                                                                                  ccGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACt                                                    >  1:126857/1‑150 (MQ=255)                                                                                                  ccGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACt                                                    >  1:349301/1‑150 (MQ=255)                                                                                                     cAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGa                                                 <  2:488762/150‑1 (MQ=255)                                                                                                          aaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGAc                                                                                                         >  2:75431‑M1/43‑89 (MQ=255)                                                                                                          aaggcaaggtcatcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGGGAACCCACCGAc                                                                                                         <  1:75431‑M1/47‑1 (MQ=255)                                                                                                              gCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGCGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTc                                                                        <  1:43837/118‑1 (MQ=255)                                                                                                              gCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTc                                                                        >  2:43837/1‑118 (MQ=255)                                                                                                                      tcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgc                                                                                                 <  2:214606‑M1/55‑1 (MQ=255)                                                                                                                      tcgtcaagtaatcaaaggctgacggcgaacCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTcgc                                                                                                 >  1:214606‑M1/31‑85 (MQ=255)                                                                                                                       cgAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTtca                               <  2:349301/150‑1 (MQ=255)                                                                                                                            tGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                          <  1:321292/150‑1 (MQ=255)                                                                                                                                 ttCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGAt                     >  1:411673/1‑150 (MQ=255)                                                                                                                                        cTTGGTAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGccc              >  1:396195/1‑150 (MQ=255)                                                                                                                                         ttGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                          >  2:310699/1‑137 (MQ=255)                                                                                                                                         ttGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                          <  1:310699/137‑1 (MQ=255)                                                                                                                                             tAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGCTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCTGGaa         <  2:408005/150‑1 (MQ=255)                                                                                                                                                gTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGt      <  1:56517/150‑1 (MQ=255)                                                                                                                                                    CCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCag  >  2:220399‑M1/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      ACGAGGCGTCACATGGCGTGACCTACGCGCAGATCGATGCCTTCCTGCATGGGCAGCCGGTTGACCAGGCAGCGTTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAG  >  NC_002947/5536932‑5537228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.