New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5537079 =	30 (1.180)	5 (0.250)	5/218	2.0	18.9%	intergenic (+8/+95)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
	?	NC_002947	5537155 =	19 (0.930)					intergenic (+84/+19)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
Rejected: Frequency below/above cutoff threshold.

TTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTTCTCAGGCGCGC  >  NC_002947/5537006‑5537301                                                                                                                                                      |                                                                                                                                                   ttCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAggg                                                                                                                                                    >  1:488762/1‑150 (MQ=255)              tcgCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGcc                                                                                                                                       >  1:177684/1‑150 (MQ=255)                      tACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                                                                                          >  2:545579/1‑139 (MQ=255)                      tACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCCCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCa                                                                                                                                          <  1:545579/139‑1 (MQ=255)                        ccGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACt                                                                                                                             >  1:126857/1‑150 (MQ=255)                        ccGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACt                                                                                                                             >  1:349301/1‑150 (MQ=255)                           cAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGa                                                                                                                          <  2:488762/150‑1 (MQ=255)                                    gCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGCGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTc                                                                                                                                                 <  1:43837/118‑1 (MQ=255)                                    gCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTc                                                                                                                                                 >  2:43837/1‑118 (MQ=255)                                             cgAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTtca                                                                                                        <  2:349301/150‑1 (MQ=255)                                                  tGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                                                                                                   <  1:321292/150‑1 (MQ=255)                                                       ttCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGAt                                                                                              >  1:411673/1‑150 (MQ=255)                                                              cTTGGTAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGccc                                                                                       >  1:396195/1‑150 (MQ=255)                                                               ttGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                                                                                                   >  2:310699/1‑137 (MQ=255)                                                               ttGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCatcatc                                                                                                   <  1:310699/137‑1 (MQ=255)                                                                   tAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGCTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCTGGaa                                                                                  <  2:408005/150‑1 (MQ=255)                                                                      gTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGt                                                                               <  1:56517/150‑1 (MQ=255)                                                                          CCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCag                                                                           >  2:220399‑M1/1‑150 (MQ=255)                                                                            TGCAGGGGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCagaa                                                                         <  2:336514‑M1/150‑1 (MQ=255)                                                                             GCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCagaag                                                                        >  2:374847‑M1/1‑150 (MQ=255)                                                                                   GCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGCGATGTGGCCCGGGAAGGTGCAGAAGAAGCTg                                                                  <  2:462063‑M1/150‑1 (MQ=255)                                                                                       GTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGt                                                              <  2:245011‑M1/150‑1 (MQ=255)                                                                                        TTCACCCTCGTATTCGCGGGTGAACCCGCCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTc                                                             <  2:615633‑M1/150‑1 (MQ=255)                                                                                             ccgcgaatgcgtcggtgggttcaccctcgtattcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                                                        >  1:277507‑M2/58‑150 (MQ=255)                                                                                             CCGCGAATACTAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCGTCATCAAGATGGGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                                                        <  1:136914‑M1/150‑1 (MQ=255)                                                                                             CCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCATTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                                                        <  1:195154‑M1/150‑1 (MQ=255)                                                                                             CCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGATAATGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                                                        <  1:15871‑M1/150‑1 (MQ=255)                                                                                              CGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGGTCGACGTCAGCCTTTGATGACTTGACGATGCCATTACCTTTCATCATCGAGATGTGGCCCGGGGAGATGCATAAGAAGCTGTAGTCaccacc                                                       <  2:551879‑M1/150‑1 (MQ=255)                                                                                               gcgaatgcgtcggtgggttcaccctcgtattcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGa                                                                                                                       <  2:214606‑M2/30‑1 (MQ=255)                                                                                               gcgaatgcgtcggtgggttcaccctcgtattcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGa                                                                                                                       >  1:214606‑M2/56‑85 (MQ=255)                                                                                                       gtcggtgggttccccctcgtattcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCtt                                                                                                           <  1:75431‑M2/42‑1 (MQ=255)                                                                                                       gtcggtgggttcaccctcgtattcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCtt                                                                                                           >  2:75431‑M2/48‑89 (MQ=255)                                                                                                               aCCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTTGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAg                                      >  2:130602/1‑150 (MQ=255)                                                                                                                      gACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGaa                               <  2:396195/150‑1 (MQ=255)                                                                                                                           attcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAacttca                          >  1:218056‑M2/28‑150 (MQ=255)                                                                                                                            ttcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAg                                                                                 <  1:521570‑M2/68‑1 (MQ=255)                                                                                                                            ttcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAg                                                                                 >  2:521570‑M2/27‑94 (MQ=255)                                                                                                                                      aacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGtttct               <  2:277507‑M2/134‑1 (MQ=255)                                                                                                                                        cccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                                                        >  2:281755‑M2/15‑107 (MQ=255)                                                                                                                                        cccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcaccac                                                        <  1:281755‑M2/93‑1 (MQ=255)                                                                                                                                            ctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTTCTCa         <  1:336514‑M2/140‑1 (MQ=255)                                                                                                                                                   aggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGGCGAACTTCACTTCGGTTTCTTTCTCAGgcgcgc  >  1:347178‑M2/4‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   TTCGACATCATCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATCATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTTCTCAGGCGCGC  >  NC_002947/5537006‑5537301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.