| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 3,357,054 | Δ9,542 bp | [PP_2953]–PP_2962 | [PP_2953], PP_2954, PP_5543, PP_2955, PP_2956, PP_2957, grx, PP_2959, PP_2960, PP_2961, PP_2962 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3357054 | 3366595 | 9542 | 59 [1] | [0] 58 | [PP_2953]–PP_2962 | [PP_2953],PP_2954,PP_5543,PP_2955,PP_2956,PP_2957,grx,PP_2959,PP_2960,PP_2961,PP_2962 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3357053 | 1 (0.020) | 56 (1.020) | 51/252 | 0.1 | 99.1% | coding (58/1008 nt) | PP_2953 | alcohol dehydrogenase |
| ? | NC_002947 | 3366596 = | 0 (0.000) | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase | |||||
GAAAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCAGGACATCTTCATGCCCAAGCCCAGCCCTGGGCCCAGGGACCTTCTGGTCGAGGTCAAAGCCGTGTCGGTCAACCCCGTAGACACCAAGGTACGCGCGGGAACTTTCACGGGAGAGCCGAAAATACTCGGCTGGGACGCGGCCGGTG > NC_002947/3356906‑3357200 | gAAAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCgg > 1:75292‑M1/1‑148 (MQ=255)gAAAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCgg < 1:287125‑M1/150‑3 (MQ=255) aaGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCCGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCgggg > 1:1445377‑M1/1‑146 (MQ=255) cccGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTTAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttattccgagataaggca > 1:248467‑M1/1‑128 (MQ=255) cccGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgcagagataaggca > 1:798817‑M1/1‑128 (MQ=255) ttCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCTTCTTCATCCCCAATGCCGTGCCTATCGATGGTCCTGCGTCTCTCCggggttatgccgagataaggcaaaaatta < 1:917473‑M1/150‑30 (MQ=255) ccgCATGGAATGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTTAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCTTCTCTCCggggttatgccgagataaggcaaaaattaggtcatt < 2:248467‑M1/149‑37 (MQ=255) gCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcg > 2:1076604‑M1/1‑112 (MQ=255) gCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataa > 2:793861‑M1/1‑103 (MQ=255) gCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataa < 1:793861‑M1/121‑19 (MQ=255) aCTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCGGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgt > 2:870186‑M1/1‑98 (MQ=255) aCTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCGGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgt < 1:870186‑M1/142‑45 (MQ=255) tCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggg > 1:1415978‑M1/1‑96 (MQ=255) tCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggg < 2:1415978‑M1/99‑4 (MQ=255) gATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatt < 1:133481‑M1/150‑57 (MQ=255) gCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgc < 2:1287420‑M1/101‑11 (MQ=255) gCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgc > 1:1287420‑M1/1‑91 (MQ=255) aaaTCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaag < 2:1066702‑M1/150‑63 (MQ=255) aaaTCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggg > 1:111676‑M1/1‑88 (MQ=255) aaaTCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggg < 2:111676‑M1/91‑4 (MQ=255) aCCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattc < 2:844215‑M1/150‑70 (MQ=255) gcagTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattc > 1:685637‑M1/1‑71 (MQ=255) gcagTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattc < 2:685637‑M1/140‑70 (MQ=255) gtgagtgCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggc < 2:1118563‑M1/150‑83 (MQ=255) tgagtgCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCAGGACATCTTCATGCCCAAGCCCAGCCCTGGGCCCAGGGACCTTCTGGTCGAGGTCAAAGCCGTGTCGGTCAACCCCGTAGac < 1:479809/150‑1 (MQ=255) tATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattagg > 1:794146‑M1/1‑59 (MQ=255) tATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggaaaaaattagg < 2:794146‑M1/90‑32 (MQ=255) tGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcat > 2:228325‑M1/1‑57 (MQ=255) aaGCGATAAGTTTAATATACAAAGGGTTGCCTATCTAAGACCCTGCGTCTCTCCggtgttatgccgagataaggcaaaaattaggacattcgttatgtaaagatagtagataaaagggtattcgagaggccgtggcttgctggtcatcca > 2:1428152‑M1/1‑54 (MQ=255) aGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccac < 1:1076604‑M1/150‑98 (MQ=255) cAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctg < 2:75292‑M1/150‑104 (MQ=255) aGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatat < 2:1015241‑M1/98‑53 (MQ=255) aGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatat > 1:1015241‑M1/1‑46 (MQ=255) tttCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattc > 1:1048079‑M1/1‑44 (MQ=255) tttCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattc < 2:1048079‑M1/81‑38 (MQ=255) aTCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCAggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagcc > 1:29108‑M1/1‑40 (MQ=255) tCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggtt < 1:658667‑M1/45‑7 (MQ=255) tCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggtt > 2:658667‑M1/1‑39 (MQ=255) acaAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggc < 1:1173035‑M1/118‑83 (MQ=255) acaAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggc > 2:1173035‑M1/1‑36 (MQ=255) aaaGGCTTGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctat > 1:845555‑M1/1‑34 (MQ=255) ttGCCTATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgat > 2:995498‑M1/1‑28 (MQ=255) tATCGAAGACCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttt > 1:1327008‑M1/1‑23 (MQ=255) aCCCTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcctcgc > 1:510230‑M1/1‑15 (MQ=255) ccTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcga < 2:524073‑M1/84‑72 (MQ=255) ccTGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcga > 1:524073‑M1/1‑13 (MQ=255) tGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcctcgcttgg < 1:228325‑M1/150‑140 (MQ=255) tGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgc > 2:709117‑M1/1‑11 (MQ=255) tGCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgc < 1:709117‑M1/135‑125 (MQ=255) gCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcctcgcttggg < 2:798817‑M1/150‑141 (MQ=255) gCGTCTCTCCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcctcgcttggg < 2:1327008‑M1/150‑141 (MQ=255) tctctcCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcctcgcttggggga < 2:29108‑M1/150‑144 (MQ=255) tctctcCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcctcgcttggggga > 1:541265‑M1/1‑7 (MQ=255) ctctcCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcctcgcttgggggat < 1:995498‑M1/150‑145 (MQ=255) tcCggggttatgtagcgaaaaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcctcgcttgggggatgtg < 2:1445377‑M1/150‑148 (MQ=255) tcCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcct > 2:85163‑M1/1‑3 (MQ=255) tcCggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttttgcct < 1:85163‑M1/135‑133 (MQ=255) cggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttt > 2:60193‑M1/1‑1 (MQ=255) cggggttatgccgagataaggcaaaaattaggacattcgttctgtaaatatatgatttaaaaggttattcgagaggccgtggcttgctggtcatccaccgtctggctagccgtctatgctgatgcttt < 1:60193‑M1/128‑128 (MQ=255) | GAAAGTGTTGACGGGCAGGGCCCGTTTTTCCCGGACGCCTGGCACGCCAGACTCGATGCCAAATCAAACCACATTCAGCAGTGAGTGCCTATGAAAGCGATCAGTTTCATCCACAAAGGCTTGCCTATCGAAGACCCTGCGTCTCTCCAGGACATCTTCATGCCCAAGCCCAGCCCTGGGCCCAGGGACCTTCTGGTCGAGGTCAAAGCCGTGTCGGTCAACCCCGTAGACACCAAGGTACGCGCGGGAACTTTCACGGGAGAGCCGAAAATACTCGGCTGGGACGCGGCCGGTG > NC_002947/3356906‑3357200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |