| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 3,357,054 | Δ9,542 bp | [PP_2953]–PP_2962 | [PP_2953], PP_2954, PP_5543, PP_2955, PP_2956, PP_2957, grx, PP_2959, PP_2960, PP_2961, PP_2962 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3357054 | 3366595 | 9542 | 59 [1] | [0] 58 | [PP_2953]–PP_2962 | [PP_2953],PP_2954,PP_5543,PP_2955,PP_2956,PP_2957,grx,PP_2959,PP_2960,PP_2961,PP_2962 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3357053 | 1 (0.020) | 56 (1.020) | 51/252 | 0.1 | 99.1% | coding (58/1008 nt) | PP_2953 | alcohol dehydrogenase |
| ? | NC_002947 | 3366596 = | 0 (0.000) | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase | |||||
ATGAAAGTCGTTCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTG > NC_002947/3366448‑3366742 | gaaagtgttgacgggcagggcccgtttttcccggacgcctggcacgccagactcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccgg > 1:75292‑M2/149‑150 (MQ=255)gaaagtgttgacgggcagggcccgtttttcccggacgcctggcacgccagactcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccgg < 1:287125‑M2/2‑1 (MQ=255) aagtgttgacgggcagggcccgtttttcccggacgcctggcacgcccgactcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccgggg > 1:1445377‑M2/147‑150 (MQ=255) cccgtttttcccggacgcctggcacgccagactcgatgccaaatcaaaccacatttagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATTCCGAGATAAGGCa > 1:248467‑M2/129‑150 (MQ=255) cccgtttttcccggacgcctggcacgccagactcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCAGAGATAAGGCa > 1:798817‑M2/129‑150 (MQ=255) ttcccggacgcctggcacgccagactcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcttcttcatccccaatgccgtgcctatcgatggtcctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTa < 1:917473‑M2/29‑1 (MQ=255) ccgcatggaatgccagactcgatgccaaatcaaaccacattcagcagttagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcttctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGTCAtt < 2:248467‑M2/36‑1 (MQ=255) gcctggcacgccagactcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCg > 2:1076604‑M2/113‑150 (MQ=255) gccagactcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATaa < 1:793861‑M2/18‑1 (MQ=255) gccagactcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATaa > 2:793861‑M2/104‑121 (MQ=255) actcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcggtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGt < 1:870186‑M2/44‑1 (MQ=255) actcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcggtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGt > 2:870186‑M2/99‑142 (MQ=255) tcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccggg < 2:1415978‑M2/3‑1 (MQ=255) tcgatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccggg > 1:1415978‑M2/97‑99 (MQ=255) gatgccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGAtt < 1:133481‑M2/56‑1 (MQ=255) gccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGc > 1:1287420‑M2/92‑101 (MQ=255) gccaaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGc < 2:1287420‑M2/10‑1 (MQ=255) aaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccggg < 2:111676‑M2/3‑1 (MQ=255) aaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccggg > 1:111676‑M2/89‑91 (MQ=255) aaatcaaaccacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAg < 2:1066702‑M2/62‑1 (MQ=255) accacattcagcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTc < 2:844215‑M2/69‑1 (MQ=255) gcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTc > 1:685637‑M2/72‑140 (MQ=255) gcagtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTc < 2:685637‑M2/69‑1 (MQ=255) gtgagtgcctatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGc < 2:1118563‑M2/82‑1 (MQ=255) tatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAgg > 1:794146‑M2/60‑90 (MQ=255) tatgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGAAAAAATTAgg < 2:794146‑M2/31‑1 (MQ=255) tgaaagcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCAt > 2:228325‑M2/58‑150 (MQ=255) aagcgataagtttaatatacaaagggttgcctatctaagaccctgcgtctctccGGTGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTATGTAAAGATAGTAGATAAAAGGGTATTCGAGAGGCCGTGGCTTGCTGGTCATCCa > 2:1428152‑M2/55‑150 (MQ=255) agcgatcagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCAc < 1:1076604‑M2/97‑1 (MQ=255) cagtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTg < 2:75292‑M2/103‑1 (MQ=255) agtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAatatat < 2:1015241‑M2/52‑1 (MQ=255) agtttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAatatat > 1:1015241‑M2/47‑98 (MQ=255) tttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTc < 2:1048079‑M2/37‑1 (MQ=255) tttcatccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTc > 1:1048079‑M2/45‑81 (MQ=255) atccacaaaggcttgcctatcgaagaccctgcgtctctcaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGcc > 1:29108‑M2/41‑150 (MQ=255) tccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGtt > 2:658667‑M2/40‑45 (MQ=255) tccacaaaggcttgcctatcgaagaccctgcgtctctccGGGGtt < 1:658667‑M2/6‑1 (MQ=255) acaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGc > 2:1173035‑M2/37‑118 (MQ=255) acaaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGc < 1:1173035‑M2/82‑1 (MQ=255) aaaggcttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTAt > 1:845555‑M2/35‑150 (MQ=255) ttgcctatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGAt > 2:995498‑M2/29‑150 (MQ=255) tatcgaagaccctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCttt > 1:1327008‑M2/24‑150 (MQ=255) accctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGc > 1:510230‑M2/16‑150 (MQ=255) cctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCga > 1:524073‑M2/14‑84 (MQ=255) cctgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCga < 2:524073‑M2/71‑1 (MQ=255) tgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGc > 2:709117‑M2/12‑135 (MQ=255) tgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGc < 1:709117‑M2/124‑1 (MQ=255) tgcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTgg < 1:228325‑M2/139‑1 (MQ=255) gcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTggg < 2:798817‑M2/140‑1 (MQ=255) gcgtctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTggg < 2:1327008‑M2/140‑1 (MQ=255) tctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGa > 1:541265‑M2/8‑150 (MQ=255) tctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGa < 2:29108‑M2/143‑1 (MQ=255) ctctccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGAt < 1:995498‑M2/144‑1 (MQ=255) tccGGGGTTATGTAGCGAAAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGAtgtg < 2:1445377‑M2/147‑1 (MQ=255) tccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCt < 1:85163‑M2/132‑1 (MQ=255) tccGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCt > 2:85163‑M2/4‑135 (MQ=255) cGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCttt > 2:60193‑M2/2‑128 (MQ=255) cGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCttt < 1:60193‑M2/127‑1 (MQ=255) | ATGAAAGTCGTTCCTTGACGTGAGGGGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTG > NC_002947/3366448‑3366742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |