New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 614300 | 21 (0.230) | 9 (0.130) | 6/188 | NT | 29.6% | intergenic (‑116/+62) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
? | NC_002947 | = 614316 | 27 (0.380) | intergenic (‑132/+46) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
CGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/614124‑614300 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtaggatcgggtttacccgcgaatgcgATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACGTTTCA < NC_002947/614316‑614168 CGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCT < 2:2033656/150‑1 GGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTA < 2:690373/150‑1 GAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGAT > 2:364979/1‑150 GAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGAT > 1:268056/1‑150 AGCAACGGCGTGACCGCGAGTTCTCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATC < 1:121269/150‑1 CAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGG < 2:1640254/150‑1 AACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGG < 2:44905/150‑1 ACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGC < 1:685728/150‑1 GCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGncgg < 2:1500846/150‑5 TTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTT > 1:1671312/1‑120 TTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTT < 2:1671312/120‑1 CGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGC < 1:1160630/150‑1 TGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGG < 2:980481/150‑1 TGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGG < 2:897693/150‑1 GAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGG < 2:2024843/95‑1 GAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGG > 1:2024843/1‑95 GTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGG > 1:309986/1‑133 GTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGG < 2:309986/133‑1 GGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGC < 1:1991441/110‑1 GGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGC > 2:1991441/1‑110 CCCATTGTGGGAAGAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCA > 1:250042/1‑95 CCCATTGTGGGAAGAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCA < 2:250042/95‑1 CTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAA < 1:1917430/150‑1 CTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATG > 1:1668335/1‑118 CTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATG > 1:1668437/1‑118 CTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATG < 2:1668335/118‑1 CTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATG < 2:1668437/118‑1 GATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAA > 1:1141550/1‑144 GATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAA < 2:1141550/144‑1 TCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGC > 1:1714522/1‑150 TCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGC > 1:364979/1‑150 TTTACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGAT > 1:1792303/1‑150 TACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAA > 2:1619006/1‑101 TACCCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAA < 1:1619006/101‑1 CCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCA < 2:1792303/150‑1 CCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCA > 1:1471230/1‑150 CCGCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCA > 1:366621/1‑150 GCGAATGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACG > 1:1839484/1‑150 TGCGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACGTT > 2:1771110/1‑150 CGATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACGTTTC > 2:268056/1‑150 GATCTTGGATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACGTTTCA > 2:976159/1‑150 GATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACGTTTCA > 1:826724/1‑150 GATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACGTTTCA > 1:1309084/1‑150 GATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGC > 2:2185435/1‑130 GATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGC < 1:2185435/130‑1 GATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACA > 1:960639/1‑113 GATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACA < 2:960639/113‑1 CGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/614124‑614300 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtaggatcgggtttacccgcgaatgcgATCTTGAATTTGCCGACGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACGTTTCA < NC_002947/614316‑614168 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |