New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 614300 | 21 (0.230) | 9 (0.130) | 6/188 | NT | 29.6% | intergenic (‑116/+62) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
? | NC_002947 | = 614316 | 27 (0.380) | intergenic (‑132/+46) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
TGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATT > NC_002947/614168‑614464 | tGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATc > 1:1309084‑M2/1‑149 (MQ=255) tGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATc > 1:826724‑M2/1‑149 (MQ=255) tGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATCCAAGATc > 2:976159‑M2/1‑149 (MQ=255) gAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcg > 2:268056‑M2/1‑148 (MQ=255) aaCGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgca > 2:1771110‑M2/1‑146 (MQ=255) cgtGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgc > 1:1839484‑M2/1‑141 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgg < 2:1792303‑M2/150‑12 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgg > 1:366621‑M2/1‑139 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgg > 1:1471230‑M2/1‑139 (MQ=255) aTCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaa > 1:1792303‑M2/1‑134 (MQ=255) gCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccga > 1:364979‑M2/1‑129 (MQ=255) gCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccga > 1:1714522‑M2/1‑129 (MQ=255) gCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATc > 2:2185435‑M2/1‑129 (MQ=255) gCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATc < 1:2185435‑M2/130‑2 (MQ=255) ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacag < 1:1917430‑M2/150‑30 (MQ=255) ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatc < 2:1141550‑M2/144‑24 (MQ=255) ttATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatc > 1:1141550‑M2/1‑121 (MQ=255) tgtgAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATc > 1:960639‑M2/1‑112 (MQ=255) tgtgAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATc < 2:960639‑M2/113‑2 (MQ=255) cATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacag < 2:1668335‑M2/118‑30 (MQ=255) cATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacag > 1:1668437‑M2/1‑89 (MQ=255) cATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacag > 1:1668335‑M2/1‑89 (MQ=255) cATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacag < 2:1668437‑M2/118‑30 (MQ=255) ttGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggta < 1:1619006‑M2/101‑15 (MQ=255) ttGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggta > 2:1619006‑M2/1‑87 (MQ=255) tGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACgcgc > 1:1020897/1‑150 (MQ=255) cacaGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAg < 2:1917430/150‑1 (MQ=255) cccccTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCtttt > 2:1443426/1‑150 (MQ=255) gATCGGGGTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGGTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAAccc > 2:1548806/1‑150 (MQ=255) aTCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt > 2:571953/1‑150 (MQ=255) aTCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt > 1:638655/1‑150 (MQ=255) tCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGcc < 2:1120678/142‑1 (MQ=255) tCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGcc > 1:1120678/1‑142 (MQ=255) cGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTg < 2:638655/150‑1 (MQ=255) ggTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTa > 1:1486039/1‑82 (MQ=255) ggTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTa < 2:1486039/82‑1 (MQ=255) tttACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTCCGGCGATAAACATGTTCACTCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGt > 1:1743214/1‑150 (MQ=38) ccGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcctgatgccca < 2:897693‑M2/150‑124 (MQ=255) ccGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcctgatgccca < 2:980481‑M2/150‑124 (MQ=255) ccGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataac < 2:309986‑M2/133‑107 (MQ=255) ccGCGAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataac > 1:309986‑M2/1‑27 (MQ=255) ccGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGc > 2:2151993/1‑150 (MQ=255) ccGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGc > 2:2085429/1‑150 (MQ=255) ccGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCAGATCCTACAGGGATAGGTGAAGCTGCTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGc > 1:387013/1‑150 (MQ=255) gcgAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgccgcgtcttcacacacctataacgactcgcctgatgcccacg < 1:1160630‑M2/150‑126 (MQ=255) gcgAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgcc < 1:1991441‑M2/110‑86 (MQ=255) gcgAATGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcacttttcccacaatggggtaaactgcc > 2:1991441‑M2/1‑25 (MQ=255) gcgAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGccg > 2:1185340/1‑149 (MQ=255) tGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcactcttcccacaatggg < 2:250042‑M2/95‑76 (MQ=255) tGCGTCGGCAAATTCAAGATcgcattcgcgggtaaacccgatcctacagggggccgcgtaacctgtggtcgaatgggcactcttcccacaatggg > 1:250042‑M2/1‑20 (MQ=255) tCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTa < 1:1123692/68‑1 (MQ=255) tCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTa > 2:1123692/1‑68 (MQ=255) tCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGt > 1:2299056/1‑150 (MQ=255) ggCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTcg > 2:1321248/1‑150 (MQ=255) ggCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTcg > 2:799675/1‑150 (MQ=255) gCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt < 1:417304/125‑1 (MQ=255) gCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt > 2:417304/1‑125 (MQ=255) aaaTTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCgcgc > 2:1029902/1‑150 (MQ=255) aaaTTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCgcgc > 1:2417457/1‑150 (MQ=255) ttCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGtt < 1:1778874/59‑1 (MQ=255) ttCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGtt > 2:1778874/1‑59 (MQ=255) aaGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACaa > 2:54552/1‑70 (MQ=255) aaGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACaa < 1:54552/70‑1 (MQ=255) aaGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGc > 1:1233404/1‑109 (MQ=255) aaGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGc < 2:1233404/109‑1 (MQ=255) aaGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCg > 2:686217/1‑150 (MQ=255) aTCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCTGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGAtt > 2:494984/1‑150 (MQ=255) aTCGCATTCGCGGGTAAACCAGATCCTACAGGGATAGGTGAAGCTGCTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGAtt < 2:387013/150‑1 (MQ=255) | TGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCGATT > NC_002947/614168‑614464 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |