| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1719958 = | 95 (1.020) | 6 (0.070) | 5/244 | NT | 6.4% | coding (95/642 nt) | PP_1515 | Transcriptional regulator, tetR family |
| ? | NC_002947 | 1720004 = | 84 (0.920) | coding (49/642 nt) | PP_1515 | Transcriptional regulator, tetR family | |||||
CTGACCCGTTAAGATGGGGATTCTTAAACCAGATGCAGACCACAATGCTCAACGACGCACCCATCGGCCCAGGCCGGCCCAAGGACCTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCCAAGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1720084‑1719958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAACTAGCTCACATTTACCTGCGGCCTGCCAGCGTTGAGTTGATCGACAGGGTG > NC_002947/1720004‑1720152 CTGACCCGTTAAGATGGGGATTCTTAAACCAGATGCAGACCACAATGCTCAACGACGCACCCATCGGCCCAGGCCGGCCCAAGGACCTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCCAAGGCCC > 1:818866/1‑126CTGACCCGTTAAGATGGGGATTCTTAAACCAGATGCAGACCACAATGCTCAACGACGCACCCATCGGCCCAGGCCGGCCCAAGGACCTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCCAAGGCCC < 2:818866/126‑1 GCCCAAGGACCTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCCAAGGCCCTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAAC > 2:1769192/1‑150 CAAGGACCTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCCAAGGCCCTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAACTAG > 1:1689811/1‑150 CAAGGACCTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCCAAGGCCCTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGA > 1:1374700/1‑108 CAAGGACCTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCCAAGGCCCTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGA < 2:1374700/108‑1 CTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCC‑AGGTCCTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGAT < 1:2298073/128‑1 CTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCC‑AGGTCCTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGAT > 2:2298073/1‑128 CTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAACTAGCTCACATTTACCTGCGGCCTGCCAGCGTTGAGTTGATCGACAGGGT < 1:1262620/150‑1 CTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAACTAGCTCACATTTACCTGCGGCCTGCCAGCGTTGAGTTGATCGACAGGGT < 1:1725771/150‑1 CTTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACAGCCGATCCGCGATACGGCTAAAACTAGCTCACATTTACCTGCGGCCTGCCAGCGTTGAGTTGATCGACAGGGT > 1:1861328/1‑150 TTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAACTAGCTCACATTTACCTGCGGCCTGCCAGCGTTGAGTTGATCGACAGGGTG > 1:296271/1‑150 TTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAACTAGCTCACATTTAC > 1:1025136/1‑114 TTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAACTAGCTCACATTTAC < 2:1025136/114‑1 CTGACCCGTTAAGATGGGGATTCTTAAACCAGATGCAGACCACAATGCTCAACGACGCACCCATCGGCCCAGGCCGGCCCAAGGACCTGGCCAAGCGCGAGGCGATCCTCGAAGCGGCCAAGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1720084‑1719958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctTGGGCCGGCCTGGGCCGATGGGTGCGTCGTTGAGCATTGTGGTCTGCATCTGGTTTAAGAATCCCCATCTTAACGGGTCAGCTGCGATACGGCTAAAACTAGCTCACATTTACCTGCGGCCTGCCAGCGTTGAGTTGATCGACAGGGTG > NC_002947/1720004‑1720152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |