New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 179225571 (0.760)4 (0.050) 4/238 NT 5.3% coding (863/1359 nt) rseP regulatory intramembrane protein RIP
?NC_002947 = 1792285 76 (0.860)coding (893/1359 nt) rseP regulatory intramembrane protein RIP

GGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTG‑‑‑‑‑‑‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1792145‑1792255
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actg‑‑‑‑‑‑‑ccTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAG  <  NC_002947/1792285‑1792137
                                                                                                                                                                                                                                                                           
GGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTG‑‑‑‑‑‑‑CCTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCC                                                                                                                <  1:1605577/150‑1
         GGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAG                                                                                                              <  2:1256214/150‑1
                                   TCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTG‑‑‑‑‑‑‑CCTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGG                                                                                                                       >  1:1854177/1‑108
                                   TCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTG‑‑‑‑‑‑‑CCTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGG                                                                                                                       <  2:1854177/108‑1
                                                                                                         ACTG‑‑‑‑‑‑‑CCTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGA       <  2:838133/150‑1
                                                                                                         ACTG‑‑‑‑‑‑‑CCTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGAGACCTCGCGCACCACTAAAAGCACCACCGTTTCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGA       >  1:1485102/1‑150
                                                                                                            G‑‑‑‑‑‑‑CCTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCC    >  1:572606/1‑150
                                                                                                                    CCTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCA   >  1:50457/1‑150
                                                                                                                     CTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAG  >  1:1303803/1‑150
                                                                                                                     CTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAG  >  1:384767/1‑150
                                                                                                                     CTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGA       <  1:237502/145‑1
                                                                                                                     CTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGA       >  2:237502/1‑145
                                                                                                                     CTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAAT               >  1:712909/1‑137
                                                                                                                     CTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAAT               <  2:712909/137‑1
                                                                                                                     CTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGGCACTGCCAAATCATCCAGAGCCAG  >  2:452224/1‑150
                                                                                                                                                                                                                                                                           
GGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTG‑‑‑‑‑‑‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1792145‑1792255
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actg‑‑‑‑‑‑‑ccTTGCCCTCCCCCTTGCGGGCCAAGGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAG  <  NC_002947/1792285‑1792137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.