| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1798196 = | 78 (0.840) | 12 (0.140) | 9/238 | NT | 14.0% | coding (77/1128 nt) | lpxB | lipid‑A‑disaccharide synthase |
| ? | NC_002947 | 1798247 = | 73 (0.820) | coding (128/1128 nt) | lpxB | lipid‑A‑disaccharide synthase | |||||
CTTGCGGCGCTTGAGCAGTTCGCGCAGGCGCCCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCCATGGGGAAATAGGATTGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1798350‑1798196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgaTGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATC > NC_002947/1798247‑1798395 CTTGCGGCGCTTGAGCAGTTCGCGCAGGCGCCCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCCATGGGGAAATAGGATTGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGC < 2:589152/150‑1 GGCGCTTGAGCAGTTCGCGCAGGCGCCCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCCATGTTAAAGTAGGCTTAACCTACCTCCGCTTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGA > 1:1356124/1‑150 TTGACCAGTTCGCGCAGGCGCCCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCTATGGGGAAATAGGATTGCAGGCCCTCGGCCTCCGTCGAGGGGCCGCCAACCCCGATGAAACGCACGTCGTGG‑TGGC‑GCGCCTTGATGGca > 2:367440/1‑148 CCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGC > 1:334724/1‑150 ATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGC < 1:1923855/92‑1 ATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGC < 2:824075/92‑1 ATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGC > 1:824075/1‑92 ATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGC > 2:1923855/1‑92 GGGCCGCCAACCCCGATGAAACGCACGTCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGG < 2:96540/102‑1 GGGCCGCCAACCCCGATGAAACGCACGTCGGGGTTGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGG > 1:96540/1‑102 CCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGG > 2:1313665/1‑112 CCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGG < 1:1313665/112‑1 CCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAG > 2:2404094/1‑100 CCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAG < 1:2404094/100‑1 ACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGCGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATC < 2:334724/150‑1 CTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGC > 1:639104/1‑113 CTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGC < 2:639104/113‑1 ATGGAGGACGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGAGTGCGCGAACTGCTCCTGCAACCTGCTCAACTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATC < 1:2254735/150‑1 CTTGCGGCGCTTGAGCAGTTCGCGCAGGCGCCCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCCATGGGGAAATAGGATTGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGC‑GCGCCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1798350‑1798196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgaTGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATC > NC_002947/1798247‑1798395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |