New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2054743	124 (1.330)	6 (0.070)	6/238	NT	5.5%	intergenic (‑75/‑160)	PP_1829/aroC	alpha/beta family hydrolase/chorismate synthase
	?	NC_002947	= 2054829	90 (1.010)					intergenic (‑161/‑74)	PP_1829/aroC	alpha/beta family hydrolase/chorismate synthase

GGGCGTTGCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2054589‑2054743 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCACACCTCCCCAT  <  NC_002947/2054829‑2054682                                                                                                                                                                                                                                                                                                                 GGGCGTTGCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTCCTATGCAGGGCAGGTC                                                                                                                                                           <  1:1663081/150‑1  GGCGTTGCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCT                                                                                                                                                          >  1:396387/1‑150     tTTGCAGTTAAGTGGGGGCGGCGCCCTGTGCTATGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       <  2:2357728/149‑1     GTTGCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       >  1:728933/1‑150     GTTGCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       >  1:1338756/1‑150     GTTGCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGATCTATGCAGAGCAGGACTGGg                                                                                                                                                       >  2:1318358/1‑149      TTGCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCC                                                                                                                                                      <  2:1781258/150‑1        GCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCCag                                                                                                                                                    >  1:2357728/1‑148                   GGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       <  1:551333/136‑1                   GGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       >  2:551333/1‑136                                         CAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       >  1:367291/1‑114                                         CAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       <  2:367291/114‑1                                                    AGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       >  2:1921412/1‑103                                                    AGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGC                                                                                                                                                       <  1:1921412/103‑1                                                                            GACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCCCTTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCG                                                                                <  2:2305480/150‑1                                                                             ACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCCCTTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGG                                                                               <  1:77726/150‑1                                                                                    GCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACC                                                                        >  1:2032935/1‑150                                                                                             CATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGG                                                               <  2:2032935/150‑1                                                                                                                  CCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAG                                                                                     >  2:91783/1‑107                                                                                                                  CCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAG                                                                                     <  1:91783/107‑1                                                                                                                                                      CTGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCACACCTCC      >  1:1679106/1‑150                                                                                                                                                       TGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCACACCTCCC     >  2:203565/1‑150                                                                                                                                                        GGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCCATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCACACATTGGGTCAAACCCACACCTCCCC    >  1:329261/1‑150                                                                                                                                                        GGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCACACCTCC      >  1:824838/1‑148                                                                                                                                                        GGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCACACCTCC      <  2:824838/148‑1                                                                                                                                                         GCCTCTTCTCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCACACCTCCCCA   <  2:485701/150‑1                                                                                                                                                         GCCTCTTCGCGGGTAAGCCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGG                                                               >  1:881752/1‑90                                                                                                                                                         GCCTCTTCGCGGGTAAGCCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGG                                                               <  2:881752/90‑1                                                                                                                                                          CCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCACACCTCCCCAT  >  2:1040129/1‑150                                                                                                                                                           CTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCA             <  2:1817735/138‑1                                                                                                                                                           CTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCA             >  1:1817735/1‑138                                                                                                                                                                                                                                                                                                                 GGGCGTTGCAGTACAGTGGGGGCGGCGGCCTGGGCCAGGCCAGTGCACAGCAGGAAGAGCAAGGCGACAAGGCGCGACATCATGCGGTACTACATGGGGAGGTGTGGGTTTGACCCAATGTTTGCGGGAAGGTTCTATGCAGGGCAGGTCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2054589‑2054743 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGACCTGCCCTGCATAGAACCTTCCCGCAAACATTGGGTCAAACCCACACCTCCCCAT  <  NC_002947/2054829‑2054682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.