New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3378443	81 (0.870)	5 (0.050)	5/244	NT	6.2%	coding (331/429 nt)	PP_2979	hypothetical protein
	?	NC_002947	= 3378480	72 (0.790)					coding (294/429 nt)	PP_2979	hypothetical protein

CCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3378342‑3378443 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTTGCTCTGGCTGGCTCTGTTGATCGGAGCCTGGAAACTCTATACCCGCTCTGCGCCGGGTCGGCTTTCTCGCACTTGGGCTCCTGAGTGAAGGTGCGTGATA  <  NC_002947/3378480‑3378333                                                                                                                                                                                                                                                            CCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTT                                                                                                      <  1:1440971/150‑1                          GAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCAC‑CAGC‑GCACCGCCCAGTGAGCCGGGGCGCTGC                                                                                                                     <  1:316929/108‑1                          GAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCAC‑CAGC‑GCACCGCCCAGTGAGCCGGGGCGCTGC                                                                                                                     >  2:316929/1‑108                                         GCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTG                                                                                                              <  1:1211612/102‑1                                         GCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTG                                                                                                              >  2:1211612/1‑102                                                                                                    CACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTTGCTCTGGCTGGCTCTGTTGATCGGAGCCTGGAAACTCTATACCCGCTCTGCGCCGGGTCGGCTTTCTCGCACTTGGGCTCCTGAG                 >  1:4574/1‑136                                                                                                    CACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTTGCTCTGGCTGGCTCTGTTGATCGGAGCCTGGAAACTCTATACCCGCTCTGCGCCGGGTCGGCTTTCTCGCACTTGGGCTCCTGAG                 <  2:4574/136‑1                                                                                                     ACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTTGCTCTGGCTGGCTCTGTTGATCGGAGCCTGGAAACTCTATACCCGCTCTGCGCCGGGTCGGCTTTCTCGCACTTGGGCTCCTGAGTGAAGGTGCGTGATA  >  2:1004038/1‑150                                                                                                     ACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTTGCTCTGGCTGGCTCTGTTGATCGGAGCCTGGAAACTCTATACCCGCTCTGCGCCGGGTCGGCTTTCTCGCACTTGGGCTCCTGAGTGAAGGTGCGTGATA  >  2:837558/1‑150                                                                                                     ACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTTGCTCTGGCTGGCTCTGTTGATCGGAGCCTGGAAACTCTATACCCGCTCTGCGCCGGGTCGGCTTTC                                    >  1:1749052/1‑116                                                                                                     ACACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTTGCTCTGGCTGGCTCTGTTGATCGGAGCCTGGAAACTCTATACCCGCTCTGCGCCGGGTCGGCTTTC                                    <  2:1749052/116‑1                                                                                                                                                                                                                                                            CCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3378342‑3378443 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacACAGCAACACCGCCCAGTGAGCCGGGGCGCTGCGCTGGTGGTCATCTTGCTCTGGCTGGCTCTGTTGATCGGAGCCTGGAAACTCTATACCCGCTCTGCGCCGGGTCGGCTTTCTCGCACTTGGGCTCCTGAGTGAAGGTGCGTGATA  <  NC_002947/3378480‑3378333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.