New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 337844381 (0.870)5 (0.050) 5/244 NT 6.2% coding (331/429 nt) PP_2979 hypothetical protein
?NC_002947 = 3378480 72 (0.790)coding (294/429 nt) PP_2979 hypothetical protein

Only 100 of 103 total aligned reads displayed.

TGTATCACGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGATCGATTGG  >  NC_002947/3378331‑3378629
                                                                                                                                                     |                                                                                                                                                     
tGTATCACGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCtgt                                                                                                                                                       <  2:2249098/150‑1 (MQ=255)
  tATCACGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgt                                                                                                                                                     >  2:837558‑M2/1‑148 (MQ=255)
  tATCACGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgt                                                                                                                                                     >  2:1004038‑M2/1‑148 (MQ=255)
      aCGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCATAGCGAGCCTGAATACGCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCtt                                                                                                                                                 >  2:82613/1‑150 (MQ=255)
      aCGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCCCTCCGCGGTGTTGCTGTGTGCtt                                                                                                                                                 >  1:120996/1‑150 (MQ=255)
      aCGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGc                                                                                                                                                   <  1:1006780/148‑1 (MQ=255)
      aCGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGc                                                                                                                                                   >  2:1006780/1‑148 (MQ=255)
      aCGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCtt                                                                                                                                                 >  2:1629778/1‑150 (MQ=255)
        gCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTc                                                                                                                                               <  1:1214973/150‑1 (MQ=255)
              tCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTc                                                                                                                                         <  1:223710/150‑1 (MQ=255)
                aCTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTc                                                                                                                                               <  1:1752395/142‑1 (MQ=255)
                aCTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTc                                                                                                                                               >  2:1752395/1‑142 (MQ=255)
                aCTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCaa                                                                                                                                       <  2:1827849/150‑1 (MQ=255)
                 cTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgtg                                                                                                                                                    >  1:4574‑M2/1‑133 (MQ=255)
                 cTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgtg                                                                                                                                                    <  2:4574‑M2/136‑4 (MQ=255)
                 cTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGAGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAg                                                                                                                                      >  2:750397/1‑150 (MQ=255)
                  tCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAgg                                                                                                                                     >  1:388921/1‑150 (MQ=255)
                  tCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGATCCGATCAACGGAGCCAACCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAgg                                                                                                                                     >  1:290451/1‑150 (MQ=255)
                    aGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAg                                                                                                                                      <  1:948791/147‑1 (MQ=255)
                    aGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAg                                                                                                                                      >  2:948791/1‑147 (MQ=255)
                    aGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGc                                                                                                                                   >  1:1825199/1‑150 (MQ=255)
                            aaGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTc                                                                                                                                               >  1:420544/1‑130 (MQ=255)
                            aaGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTc                                                                                                                                               <  2:420544/130‑1 (MQ=255)
                                 cGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCAt                                                                                                                      >  1:579291/1‑150 (MQ=255)
                                   agaAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTc                                                                                                                    <  1:1601774/150‑1 (MQ=255)
                                    gaAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgt                                                                                                                                                     <  2:1749052‑M2/116‑3 (MQ=255)
                                    gaAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgt                                                                                                                                                     >  1:1749052‑M2/1‑114 (MQ=255)
                                      aaGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGTGCTGGTTTACCACCAGCCAAGCGCCCCGGCTCACCGGGCGGTGTTGCTGGGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTc                                                                                                                 <  1:1124499/150‑1 (MQ=255)
                                         ccGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAg                                                                                                              <  2:579291/150‑1 (MQ=255)
                                         ccGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAg                                                                                                              >  1:751247/1‑150 (MQ=255)
                                                   gcAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGTGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCg                                                                                                    <  1:29801/150‑1 (MQ=255)
                                                   gcAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCg                                                                                                    <  2:751247/150‑1 (MQ=255)
                                                     agagCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCggg                                                                                                  <  2:1825199/150‑1 (MQ=255)
                                                           ggTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAg                                                                                            <  1:1845813/150‑1 (MQ=255)
                                                           ggTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAg                                                                                            <  1:633290/150‑1 (MQ=255)
                                                             tataGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTACCATTTAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCt                                                                                          >  1:1330954/1‑150 (MQ=255)
                                                              ataGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGAATTGATGCAGTACGTGATCGGGCATCAGCtt                                                                                         >  1:604073/1‑150 (MQ=255)
                                                               taGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCggg                                                                                                  <  2:1732601/140‑1 (MQ=255)
                                                               taGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTg                                                                                        >  2:1931928/1‑150 (MQ=255)
                                                               taGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTg                                                                                        >  1:821121/1‑150 (MQ=255)
                                                               taGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGCGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCggg                                                                                                  >  1:1732601/1‑140 (MQ=255)
                                                                 gagTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGac                                                                                      >  2:702581/1‑149 (MQ=255)
                                                                  agTTTCCAGGCTCCGATCAACAGAGCCAGCCAGCGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGAtt                                                                                     >  2:5372/1‑150 (MQ=255)
                                                                  agTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGAtt                                                                                     >  2:539775/1‑150 (MQ=255)
                                                                    tttCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTAc                                                                                   <  1:673227/150‑1 (MQ=255)
                                                                        cAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGc                                                                               <  2:1783169/150‑1 (MQ=255)
                                                                         aGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGGGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCCGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGcc                                                                              <  1:750397/150‑1 (MQ=255)
                                                                            cTCCGATCAGCAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGa                                                                           >  2:1912646/1‑150 (MQ=255)
                                                                            cTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGa                                                                           <  2:388921/150‑1 (MQ=255)
                                                                               cGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATgg                                                                        >  2:2029047/1‑150 (MQ=255)
                                                                                gATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTAc                                                                                   >  2:2322311/1‑138 (MQ=255)
                                                                                gATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTAc                                                                                   <  1:2322311/138‑1 (MQ=255)
                                                                                gATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGc                                                                       >  2:1022210/1‑150 (MQ=255)
                                                                                 aTCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTc                                                                                                                 >  2:575209/1‑107 (MQ=255)
                                                                                 aTCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTc                                                                                                                 <  1:575209/107‑1 (MQ=255)
                                                                                        gagCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTa                                                               <  2:120996/150‑1 (MQ=255)
                                                                                           ccagccagAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCGGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCa                                                            >  2:2031291/1‑150 (MQ=255)
                                                                                               ccagAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGAt                                                        >  2:43168/1‑150 (MQ=255)
                                                                                               ccagAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTCTGTGTTCTCCATCTTGAGAGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGAt                                                        <  1:542551/150‑1 (MQ=255)
                                                                                                cagAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCtt                                                                                         <  2:163485/116‑1 (MQ=255)
                                                                                                cagAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCtt                                                                                         >  1:163485/1‑116 (MQ=255)
                                                                                                 agagCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAgttac                                                      <  1:82613/150‑5 (MQ=255)
                                                                                                    gCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACAt                                                   >  1:1237171/1‑150 (MQ=255)
                                                                                                      aaGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgtggtcatcttgctctggctggctctgttgatcggagcctggaaactctatacccgctctgcgccgggtcggctttctcgcacttgggctcctgagtgaagg                                                 <  1:1440971‑M2/150‑103 (MQ=255)
                                                                                                       aGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGt                                                <  2:1433233/150‑1 (MQ=255)
                                                                                                        gATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTc                                               >  1:1633619/1‑150 (MQ=255)
                                                                                                              caccaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgtggtcatcttgctctggctggctctgttgatcggagcctggaaactctatacccgctctgc                                                                                         <  1:1211612‑M2/102‑63 (MQ=255)
                                                                                                              caccaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTgtggtcatcttgctctggctggctctgttgatcggagcctggaaactctatacccgctctgc                                                                                         >  2:1211612‑M2/1‑40 (MQ=255)
                                                                                                              caccaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCTTCGTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTa                                         <  1:1330870/150‑1 (MQ=255)
                                                                                                              caccaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTa                                         >  2:648780/1‑150 (MQ=255)
                                                                                                              caccaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTAATAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTa                                         >  1:2359107/1‑150 (MQ=255)
                                                                                                               accaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAgg                                                                 <  1:1456023/125‑1 (MQ=255)
                                                                                                               accaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAgg                                                                 >  2:1456023/1‑125 (MQ=255)
                                                                                                               accaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAgg                                           >  1:2134775/1‑147 (MQ=255)
                                                                                                               accaGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAgg                                           <  2:2134775/147‑1 (MQ=255)
                                                                                                                     gcagcgcCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAgg                                  <  1:74874/150‑1 (MQ=255)
                                                                                                                     gcagcgcCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAgg                                  <  1:2029047/150‑1 (MQ=255)
                                                                                                                     gcagcgcCCCGGCTCACTGGGCGGTGCGCTGtggtcatcttgctctggctggctctgttgatcggagcctggaaactctatacccgctctgcgccgggtcggctttc                                                                            <  1:316929‑M2/108‑77 (MQ=255)
                                                                                                                     gcagcgcCCCGGCTCACTGGGCGGTGCGCTGtggtcatcttgctctggctggctctgttgatcggagcctggaaactctatacccgctctgcgccgggtcggctttc                                                                            >  2:316929‑M2/1‑32 (MQ=255)
                                                                                                                            cccGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAg                                                                                                                                      >  2:1734455/1‑43 (MQ=255)
                                                                                                                            cccGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAg                                                                                                                                      <  1:1734455/43‑1 (MQ=255)
                                                                                                                            cccGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGaa                           >  1:461134/1‑150 (MQ=255)
                                                                                                                             ccGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAAt                          <  2:821121/150‑1 (MQ=255)
                                                                                                                                  tCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCa                                                            >  2:2033828/1‑111 (MQ=255)
                                                                                                                                  tCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCa                                                            <  1:2033828/111‑1 (MQ=255)
                                                                                                                                    aCTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCt                   >  1:1545120/1‑150 (MQ=255)
                                                                                                                                     cTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTg                  <  1:176291/150‑1 (MQ=255)
                                                                                                                                         gCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAAt              <  1:1931928/150‑1 (MQ=255)
                                                                                                                                           ggTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCa            <  1:648780/150‑1 (MQ=255)
                                                                                                                                             tgtTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGa          <  1:1629778/150‑1 (MQ=255)
                                                                                                                                              gtTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGAt         <  1:539775/150‑1 (MQ=255)
                                                                                                                                                  cTGTGTGCTTTCCCAGTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGATCGAt     <  2:604073/150‑1 (MQ=255)
                                                                                                                                                   tgtgtgCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGATCGAtt    <  1:1022210/150‑1 (MQ=255)
                                                                                                                                                    gtgtgCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTa                                                                                 >  1:163816/1‑72 (MQ=255)
                                                                                                                                                    gtgtgCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTa                                                                                 <  2:163816/72‑1 (MQ=255)
                                                                                                                                                    gtgtgCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGATCGATTg   >  2:454970/1‑150 (MQ=255)
                                                                                                                                                    gtgtgCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGGACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCGAGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGATCGATTg   <  2:83238/150‑1 (MQ=255)
                                                                                                                                                     tgtgCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGaa                       <  2:729248/129‑1 (MQ=255)
                                                                                                                                                     tgtgCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGaa                       >  1:729248/1‑129 (MQ=255)
                                                                                                                                                     tgtgCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTAATAGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGATCGATTgg  >  2:1977850/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGTATCACGCACCTTCACTCAGGAGCCCAAGTGCGAGAAAGCCGACCCGGCGCAGAGCGGGTATAGAGTTTCCAGGCTCCGATCAACAGAGCCAGCCAGAGCAAGATGACCACCAGCGCAGCGCCCCGGCTCACTGGGCGGTGTTGCTGTGTGCTTTCCCATTCAAGGGCCTGCTGGCGGCATTCGTCCAGTACGTGATCGGGCATCAGCTTGATTACTAGCCAGATGGCCAAAGGTAGCAAGATCACATCGTCCAGGTAGCCAAGGACCGGAATGAAGTCTGGAATCAGATCGATTGG  >  NC_002947/3378331‑3378629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.