| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3400499 = | 100 (1.070) | 5 (0.060) | 4/242 | NT | 5.4% | coding (114/549 nt) | PP_3006 | ECF family RNA polymerase sigma‑70 factor |
| ? | NC_002947 | 3400544 = | 80 (0.890) | coding (69/549 nt) | PP_3006 | ECF family RNA polymerase sigma‑70 factor | |||||
GCCGGGGTACTTGCCTTACACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3400649‑3400499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCA > NC_002947/3400544‑3400651 GCCGGGGTACTTGCCTTACACAATGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGG < 2:551141/150‑1GCCGGGGTACTTGCCTTACACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGG > 1:1141755/1‑150 ACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGG > 1:1095928/1‑130 ACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGG < 2:1095928/130‑1 GCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGG > 1:1541256/1‑150 CTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCAGGCGAGTTCAACGTGTGTAGCTTCCTTGTGTAAGGCAAGTACCCCGGCCA > 2:1249817/1‑150 CTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCAGGGCCCGTCGGTCACCCTGTGCACAGGCCAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCA > 1:848538/1‑150 AGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGT > 1:573777/1‑103 AGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGCCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGT < 2:573777/103‑1 GCCGGGGTACTTGCCTTACACAAGGAAGCCACACACGTTGAACTCGCCGGCCGCCCCCTTCGACTTCCACCGCTGCCTGTTAGCCTGTGCACAGGGTGACCGACGGGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3400649‑3400499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcCCGTCGGTCACCCTGTGCACAGGCTAACAGGCAGCGGTGGAAGTCGAAGGGGGCGGCCGGCGAGTTCAACGTGTGTGGCTTCCTTGTGTAAGGCAAGTACCCCGGCCA > NC_002947/3400544‑3400651 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |