New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3963855 = | 68 (0.730) | 5 (0.060) | 5/240 | NT | 6.6% | coding (193/933 nt) | PP_3493 | LysR family transcriptional regulator |
? | NC_002947 | 3963900 = | 76 (0.850) | coding (148/933 nt) | PP_3493 | LysR family transcriptional regulator |
TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGT‑GAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3964007‑3963855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGGTGAAGGTACGCATGG‑CATGCAGCATGTCCAT > NC_002947/3963900‑3964047 TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGT‑GAGC > 2:1481708/1‑150 GAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGG‑GAGCGG > 1:1899575/1‑150 AATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGT‑GAGCGGT < 2:429579/150‑1 CCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGT‑GAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTC > 2:1522389/1‑150 GCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCC > 2:157181/1‑150 ACCACCCGGCGCCTGCGCATGAGCGAGGCGGGT‑GAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCA > 1:406782/1‑148 ACCACCCGGCGCCTGCGCATGAGCGAGGCGGGT‑GAGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCA < 2:406782/148‑1 ACCCGGCGCCTGCGCATGAGCGAGGCGGGTGGTGCGGTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCAC > 1:850203/1‑150 GTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGGTGAAGGTACGCATGGACATGCTGCATGccat < 2:1829542/150‑5 GTGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGGTGAAGGTACGCATGG‑CATGCAGCATGTCCAT > 2:55600/1‑150 TGGAATGTGGCAGCTTCGCTGCAGCTGCCAATGCTCTGGATATTTCTGCAGCGCAGGTTTCGCGCATCGTCGCCGAGCTGGAGAACCAGCTGCAGACCCGCCTGCTGCACCGCACCACCCGGCGCCTGCGCATGAGCGAGGCGGGT‑GAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3964007‑3963855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtGCAGCAGGCGGGTCTGCAGCTGGTTCTCCAGCTCGGCGACGATGCGCGAAACCTGCGCTGCAGAAATATCCAGAGCATTGGCAGCTGCAGCGAAGCTGCCACATTCCACCACCCGGGTGAAGGTACGCATGG‑CATGCAGCATGTCCAT > NC_002947/3963900‑3964047 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |