| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4039437 = | 85 (0.910) | 10 (0.110) | 7/236 | NT | 11.8% | coding (250/864 nt) | PP_3560 | LysR family transcriptional regulator |
| ? | NC_002947 | 4039462 = | 69 (0.780) | coding (275/864 nt) | PP_3560 | LysR family transcriptional regulator | |||||
CACGCGCCGCGCCAGCTCCGCCGACATGCCCGAGGCCACGCTGATGTGTAGCTGCGGGTGATGGGCCTTGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4039592‑4039437‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgctTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGA > NC_002947/4039462‑4039609 CACGCGCCGCGCCAGCTCCGCCGACATGCCCGAGGCCACGCTGATGTGTAGCTGCGGGTGATGGGCCTTGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGG > 2:61011/1‑150CACGCGCCGCGCCAGCTCCGCCGACATGCCCGAGGCCACGCTGATGTGTAGCTGCGGGTGATGGGCCTTGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGG < 1:2128733/150‑1 GCCGCGCCAGCTCCGCCGACATGCCCGAGGCCACGCTGATGTGTAGCTGCGGGTGATGGGCCTTGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGC > 1:464585/1‑150 tGTGATGGGCCTTGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGC < 1:145802/98‑1 GGTGATGGGCCTTGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGC > 2:145802/1‑99 TGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGG > 1:1411401/1‑82 TGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGG < 2:1411401/82‑1 CCCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCG > 1:183478/1‑150 CCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGC‑TG‑GCCAGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAG > 2:2055030/1‑150 CCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGA < 2:183478/150‑1 CAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCTGGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGC > 2:1554328/1‑150 AAGCGGCCGCGCAGGCTTGGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCG > 2:95999/1‑150 AAGCGGCCGCGCAGGCTTGGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCG > 1:1594797/1‑150 AAGCGGCCGCGCAGGCTTGGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAA < 1:2039502/90‑1 AAGCGGCCGCGCAGGCTTGGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGGTTGCCCAAGGCGCTGGTGTGGATCAA > 2:2039502/1‑90 AAGCGGCCGCGCAGGCTTGGGCCGCTTGCGCCTGGGGGCGATCAACAAGATTGTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCG > 1:2275294/1‑150 GCCGCGCAGGCTTGGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCG > 1:2323677/1‑150 GCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCA > 2:1188010/1‑85 GCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCA < 1:1188010/85‑1 CCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAATGCGCTGGTGTGTATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCT < 1:2366842/150‑1 CGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTC < 2:1594797/150‑1 CGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCAAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTC > 2:1863367/1‑150 tTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGA < 2:1767606/149‑1 TTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTG > 1:2213216/1‑59 TTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTG < 2:2213216/59‑1 CACGCGCCGCGCCAGCTCCGCCGACATGCCCGAGGCCACGCTGATGTGTAGCTGCGGGTGATGGGCCTTGATCCACACCAGCGCCTTGGGCAAACGCCGCGCCAGCACCGTGTGGATCGCCCCCAGGCGCAAGCGGCCGCGCAGGCTTGGGCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4039592‑4039437‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgctTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGA > NC_002947/4039462‑4039609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |