New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 429119468 (0.730)9 (0.100) 7/234 NT 12.5% coding (1437/3468 nt) PP_3761 two‑component system sensor histidine kinase/response regulator
?NC_002947 = 4291207 62 (0.710)coding (1424/3468 nt) PP_3761 two‑component system sensor histidine kinase/response regulator

ATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4291039‑4291194
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcaggCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGAGGAGC  <  NC_002947/4291207‑4291061
                                                                                                                                                                                                                                                                                                                
ATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGC                                                                                                                                                            <  2:2219495/150‑1
     TTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAG                                                                                                                                                       >  2:2390777/1‑150
     TTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAG                                                                                                                                                       <  1:2136249/150‑1
                         CCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGGCCCGTGCCGACGACCTGCA                                                                                                                                  <  1:1412399/150‑1
                             GCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGG                                                                                                                                                      <  1:1267938/127‑1
                             GCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGG                                                                                                                                                      >  2:1267938/1‑127
                                       CCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGGCCCGTGCCGACGACCTGCAGCGATCGAGCAAGT                                                                                                                    >  1:1029474/1‑150
                                         TTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGGCCCGTGCCGACAACCTGCAG                                                                                                                                 >  1:1389466/1‑135
                                         TTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGGCCCGTGCCGACAACCTGCAG                                                                                                                                 <  2:1389466/135‑1
                                                                                  TGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGGCCCGTGCCGACGACCTGCA                                                                                                                                  <  1:1205595/93‑1
                                                                                  TGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGGCCCGTGCCGACGACCTGCA                                                                                                                                  >  2:1205595/1‑93
                                                                                                        ATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGGCCCGTGCCGACGACCTGCAG                                                                                                                                 >  1:1332786/1‑72
                                                                                                        ATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGGCCCGTGCCGACGACCTGCAG                                                                                                                                 <  2:1332786/72‑1
                                                                                                                                GGACTTATACTTGCTCGATCGCTGCAGGTCGTCGGCACGGGCCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAAC                           >  2:1029474/1‑150
                                                                                                                                                     CTGCAGGCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGAG      <  2:1310601/150‑1
                                                                                                                                                     CTGCAGGCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGAG      <  2:1848271/150‑1
                                                                                                                                                     CTGCAGGCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGAG      <  1:2213903/150‑1
                                                                                                                                                     CTGCAGGCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGAG      <  2:2244421/150‑1
                                                                                                                                                       GCAGGCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGAGGA    >  1:400820/1‑150
                                                                                                                                                        CAGGCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGCGGAG   >  2:2431221/1‑150
                                                                                                                                                         AGGCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGAGGAGC  <  1:129422/150‑1
                                                                                                                                                                                                                                                                                                                
ATGGATTCGGCGAACTTGACCTGCTCCTCGCTGAGGTTGCCTTCAGCGTTTTCTGCCAACAGCTTGGCCAGGATCAGCGAGCTGTTGAGCGGCGTGCGCAGCTCATGGGACATGTTGGCGAGGAATTCGGACTTATACTTGCTCGATCGCTGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4291039‑4291194
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcaggCCCGTGCCGACGACCTGCAGCGATCGAGCAAGTATAAGTCCGAATTCCTCGCCAACATGTCCCATGAGCTGCGCACGCCGCTCAACAGCTCGCTGATCCTGGCCAAGCTGTTGGCAGAAAACGCTGAAGGCAACCTCAGCGAGGAGC  <  NC_002947/4291207‑4291061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.