New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4536831 =	NA (NA)	5 (0.060)	5/240	NT	5.8%	coding (122/1533 nt)	PP_4025	transposase
	?	NC_002947	= 4627418	84 (0.900)					coding (132/1533 nt)	PP_4091	transposase

CTGCTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTtgacc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4536979‑4536831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGATGATGCCGACGAAGAAGTTGTTGCGCCAAGCAAGCAGCGCGGCAAACGCAAG  <  NC_002947/4627418‑4627265                                                                                                                                                                                                                                                                                                                 CTGCTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTT                                                                                                                                                           <  1:594811/150‑1   GCTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGA                                                                                                                                                         <  1:706194/150‑1    CTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGAC                                                                                                                                                        <  1:1032902/150‑1    CTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGAC                                                                                                                                                        <  1:2430066/150‑1    CTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGAC                                                                                                                                                        >  1:568571/1‑150    CTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGAC                                                                                                                                                        >  1:929278/1‑150    CTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGAC                                                                                                                                                        <  1:932272/150‑1    CTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGAAGCAGCTTGAC                                                                                                                                                        <  2:1056940/150‑1     TTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGACC                                                                                                                                                       >  2:361066/1‑150                                                    CCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCAAGCTGCTGCGTGACCGATTATTCAA                                                                                                                                             <  1:1482321/113‑1                                                    CCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCAAGCTGCTGCGTGACCGATTATTCAA                                                                                                                                             >  2:1482321/1‑113                                                                          AACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCAAGCTGCTGCGTGACCGATTATT                                                                                                                                                <  1:2410638/88‑1                                                                          AACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCAAGCTGCTGCGTGACCGATTATT                                                                                                                                                >  2:2410638/1‑88                                                                                                       GACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGAC                                                                                                                                                        >  1:135384/1‑51                                                                                                       GACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTTGAC                                                                                                                                                        <  2:135384/51‑1                                                                                                                                     TCGGGCACGCAGCAGCTTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCTAAAGTCAGTGGGTTCCTACCGCTGATGATGCCGACGAAGAAGTTGTTGCGCCAAGC                       >  1:2232667/1‑150                                                                                                                                                     TTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGATGATGCCGACGAAGAAGTTGTTGCGCCAAGCAAGCAGCGCGGCAAAC       <  2:2232667/150‑1                                                                                                                                                          CGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGATGATGCCGACGAAGAAGTTGTTGCGCCAAGCAAGCAGCGCGGCAAACGCAAG  >  2:1785444/1‑150                                                                                                                                                          CGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGATGATGCCGACGAAGAAGTTGTTGCGCCAAGCAAGCAGCGCGGCAAACGCAAG  >  1:612649/1‑150                                                                                                                                                          CGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGATGATGCCGACGAAGAAGTTGTTGCGCCAAGCAAGCAGCGCGGCAAACGCAAG  >  2:379351/1‑150                                                                                                                                                                                                                                                                                                                 CTGCTTGCTTGGCGCAACAACTTCTTCGTCGGCATCATCAGCGGTAGGTACCCACTGACTTTCGGGTTCATTGAACAACGCCAGTTGGGGCGTGTTGGACTCGACGGTTTGCTCGGACTTGCGATTGAATAATCGGTCACGCAGCAGCTtgacc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4536979‑4536831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCGAGTCCAACACGCCCCAACTGGCGTTGTTCAATGAACCCGAAAGTCAGTGGGTTCCTACCGCTGATGATGCCGACGAAGAAGTTGTTGCGCCAAGCAAGCAGCGCGGCAAACGCAAG  <  NC_002947/4627418‑4627265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.