New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4536831 =	NA (NA)	5 (0.060)	5/240	NT	5.8%	coding (122/1533 nt)	PP_4025	transposase
	?	NC_002947	= 4627418	84 (0.900)					coding (132/1533 nt)	PP_4091	transposase

GGGTATAATCCGGGCCATGATTTCAGTGCCCGATAACCTTCCTGACGACCCTGCCGCGCTCAAACTACTGCTTGCGCAGTTGTTGGCCGAGCGCACGGTCGACAAAGGTCAGATCGTCGACCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCG  >  NC_002947/4536694‑4536878                                                                                                                                          |                                                ggctataATCCGGGCCATGATTTCAGTGCCCGATAACCTTCCTGACGACCCTGCCGCGCTCAAACTACTGCTTGCGCAGTTGTTGGCCGAGCGCACGGTCGACAAAGGTCAGATCGTCGACCTTAAAGAACAGGTCAAGCTGCTGCGTGa                                     >  1:684128/4‑150 (MQ=1)                                    cccgtCCTGACGACCCTGCCGCGCTCAAACTACTGTTTGCGCAGTTGTTGGCCGAGCGCACGGTCTACAAAGGTCAGATCGTCGACCTTAAAGAACAGGTCAAGCTGCTGCGTGGCCGATTATCCAATCGCAAGTCCGAGCAAACCGTCg  <  2:1782424/146‑1 (MQ=1)                                                                                                                                          |                                                GGGTATAATCCGGGCCATGATTTCAGTGCCCGATAACCTTCCTGACGACCCTGCCGCGCTCAAACTACTGCTTGCGCAGTTGTTGGCCGAGCGCACGGTCGACAAAGGTCAGATCGTCGACCTTAAAGAACAGGTCAAGCTGCTGCGTGACCGATTATTCAATCGCAAGTCCGAGCAAACCGTCG  >  NC_002947/4536694‑4536878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.