New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5856874	137 (1.470)	8 (0.090)	7/240	NT	5.6%	coding (745/1392 nt)	PP_5133	membrane protein
	?	NC_002947	= 5856913	139 (1.550)					coding (784/1392 nt)	PP_5133	membrane protein

TTGCTGGCGACCCGGCGCTATGGCTTTGTCTGGGAAACCACCTTGCTCGCCGCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA‑‑‑‑GCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5856721‑5856874 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ca‑‑‑‑gccAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCTGTCGCCGCTGGCGCGGATCATGGCTTCGTCGGGCACGGCGAAGCCCAGCAACGACGGGAGGGCGCCCAGTGCTTGGGTCAGGTGAATGAACGGGTCGGCGGCGA  <  NC_002947/5856913‑5856767                                                                                                                                                                                                                                                                                                                           TTGCTGGCGACCCGGCGCTATGGCTTTGTCTGGGAAACCACCTTGCTCGCCGCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑C                                                                                                                                                             <  1:1846116/150‑1     TGGCGACCCGGCGCTATGGCTTTGTCTGGGAAACCACCTTGCTCGCCGCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCCCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA‑‑‑‑GCC                                                                                                                                                     >  1:516064/1‑150              GGCGCTATGGCTTTGTCTGGGAAACCACCTTGCTCGCCGCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA                                                                                                                                                            <  1:867629/138‑1              GGCGCTATGGCTTTGTCTGGGAAACCACCTTGCTCGCCGCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA                                                                                                                                                            >  2:867629/1‑138                                     ACCACCTTGCTCGCCGCCGACCCGCTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA‑‑‑‑GCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGG                                                                                                                     >  1:50229/1‑150                                                CGCCGCCGACCCGCTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA‑‑‑‑GCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCT                                                                                                          <  2:50229/150‑1                                                 GCCGCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGACAGCCTGCCA‑‑‑‑GCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTG                                                                                                                 <  1:550970/150‑1                                                 GCCGCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CAGCCTGCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAG                                                                                                             <  1:731406/150‑1                                                    GCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CAGCCTGCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCT                                                                                                          <  2:526819/150‑1                                                          CCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA‑‑‑‑GCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCTGTCGCC                                                                                                    >  2:1973603/1‑146                                                          CCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCCACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA‑‑‑‑GCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCTGTCGCC                                                                                                    <  1:1973603/146‑1                                                               CATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCACGCC‑‑‑‑GAG‑‑‑‑‑‑‑‑‑CA‑‑‑‑GCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCTGTCGCCGCTGGCGCGGATCA                                                                                      <  2:1432368/150‑1                                                                                                                                                              CA‑‑‑‑GCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCTGTCGCCGCTGGCGCGGATCATGGCTTCGTCGGGCACGGCGAAGCCCAGCAACGACGGGAGGGCGCCCAGTGCTTGGGTCAGGTGAATGAACGGGTCGGCGGC    >  1:613198/1‑150                                                                                                                                                                  ctGCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCTGTCGCCGCTGGCGCGGATCATGGCTTCGTCGGGCACGGCGAAGCCCAGCAACGACGGGAGGGCGCCCAGTGCTTGGGTCAGGTGAATGAACGGGTCGGCGGC    >  2:311413/3‑150                                                                                                                                                                    GCCAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCTGTCGCCGCTGGCGCGGATCATGGCTTCGTCGGGCACGGCGAAGCCCAGCAACGACGGGAGGGCGCCCAGTGCTTGGGTCAGGTGAATGAACGGGTCGGCGGCGA  <  2:572742/150‑1                                                                                                                                                                                                                                                                                                                           TTGCTGGCGACCCGGCGCTATGGCTTTGTCTGGGAAACCACCTTGCTCGCCGCCGACCCGTTCATTCACCTGACCCAAGCACTGGGCGCCCTCCCGTCGTTGCTGGGCTTCGCCGTGCCCGACGAAGCCATGATCCGCGCCAGCGGCGA‑‑‑‑‑‑‑‑CA‑‑‑‑GCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5856721‑5856874 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ca‑‑‑‑gccAGCTGGCCCAGGCCTGGCGGGCCACGTCCAGGGCTGGCAGGCTGTCGCCGCTGGCGCGGATCATGGCTTCGTCGGGCACGGCGAAGCCCAGCAACGACGGGAGGGCGCCCAGTGCTTGGGTCAGGTGAATGAACGGGTCGGCGGCGA  <  NC_002947/5856913‑5856767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.