New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5903842	72 (0.770)	8 (0.100)	5/218	NT	10.5%	intergenic (+42/+65)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903870	73 (0.900)					intergenic (+70/+37)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease

CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5903678‑5903842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAACAAT  <  NC_002947/5903870‑5903723                                                                                                                                                                                                                                                                                                                           CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATG                                                                                                                                                                     <  1:1749533/150‑1         GCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGCAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCgaa                                                                                                                                                             <  2:1659297/150‑4         GCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCgaa                                                                                                                                                             <  2:143975/150‑4           GGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCA                                                                                                                                                           <  1:1551152/150‑1            GCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAACCGGGGCTGGAGCCTTCGCGGGCATGCCCGCTCCCAC                                                                                                                                                          <  1:1772114/150‑1              AGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                                                        >  2:767788/1‑150               GGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCACGCCCGCTCCCACAGG                                                                                                                                                       >  2:790514/1‑150                GAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                      <  1:2076016/150‑1                                  GTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCCGACGTATCAGGTATTAGTCTCCTTGTGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGG                                                                                                                                    <  1:1223502/150‑1                                  GTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGG                                                                                                                                    <  1:790514/150‑1                                                  TTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGT                                                                                                                    <  2:1636049/150‑1                                                   TGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCGTCGCGGGCATGCCCGCTCCCACAGGGACCTCAAAGATGTCAGGGTTGTGGTGAGCCCTGTG                                                                                                                   <  1:324122/150‑1                                                    GCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                                  <  1:1088597/150‑1                                                    GCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                                  <  2:548970/150‑1                                                      CAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                      >  2:389326/1‑112                                                      CAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                      <  1:389326/112‑1                                                      CAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                                                        >  2:1432363/1‑110                                                      CAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                                                        <  1:1432363/110‑1                                                             TTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                      >  2:962832/1‑105                                                             TTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                      <  1:962832/105‑1                                                                        ATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                                  <  2:206357/130‑1                                                                        ATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                                  >  1:206357/1‑130                                                                                                TCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACA                                                                                                                                                         >  1:1061364/1‑67                                                                                                TCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACA                                                                                                                                                         <  2:1061364/67‑1                                                                                                                                                      GCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTTGGTAGTCCCTGA                                          >  1:1307836/1‑124                                                                                                                                                      GCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGA                                 >  2:1395756/1‑133                                                                                                                                                      GCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGA                                 <  1:1395756/133‑1                                                                                                                                                      GCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGA                                          <  2:1307836/124‑1                                                                                                                                                      GCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGC                                                                         >  1:835703/1‑93                                                                                                                                                      GCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGC                                                                         <  2:835703/93‑1                                                                                                                                                        CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGACATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGATCAATCCAGCCCTCAAGGG              >  2:1261557/1‑150                                                                                                                                                          GCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCC                                                                                         <  2:375164/73‑1                                                                                                                                                          GCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCC                                                                                         >  1:375164/1‑73                                                                                                                                                          GCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGG                                                                                                           <  2:1520341/55‑1                                                                                                                                                          GCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGG                                                                                                           >  1:1520341/1‑55                                                                                                                                                          GCTCCCACAGGGACCCCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGAACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGAT            <  2:204061/150‑1                                                                                                                                                              CCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCACTCCAGCCCTCAAGGGATTGGC        >  2:850540/1‑150                                                                                                                                                               CACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCCGCACTCAAGGGATTGGCA       >  2:771507/1‑150                                                                                                                                                               CACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGC                                                                         <  1:2161977/84‑1                                                                                                                                                               CACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGC                                                                         >  2:2161977/1‑84                                                                                                                                                                ACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGCTTGGCAA      >  1:275293/1‑150                                                                                                                                                                    GGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAACAAT  <  2:1728598/150‑1                                                                                                                                                                    GGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAACAAT  >  1:857821/1‑150                                                                                                                                                                    GGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGA                                 <  2:1945694/119‑1                                                                                                                                                                    GGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGA                                 >  1:1945694/1‑119                                                                                                                                                                                                                                                                                                                           CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5903678‑5903842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAACAAT  <  NC_002947/5903870‑5903723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.