New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5980299 =	112 (1.200)	6 (0.070)	5/246	NT	5.4%	coding (888/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5980337 =	100 (1.090)					coding (926/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

GAGAGCGGCTTCGACCAGGCTCGACTTGCCCATGCCAGCAGCGCCGTTGATGACCAGGGCTTGTGGTTTGCTATCGCGATTCAAGGCCTTGAGCAGCAGGGTGATAGCCTTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGG‑‑‑‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5980449‑5980299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTCGAGCCTGGTCGAAGCCGCTCTCA  >  NC_002947/5980337‑5980450                                                                                                                                                                                                                                                                                  GAGAGCGGCTTCGACCAGGCTCGACTTGCCCATGCCAGCAGCGCCGTTGATGACCAGGGCTTGTGGTTTGCTATCGCGATTCAAGGCCTTGAGCAGCAGGGTGATAGCCTTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGG‑‑‑‑‑‑‑G                                                                                                                     <  2:2320788/150‑1                                                                                                             CTTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGG‑‑‑‑‑‑‑GCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTCGAGCCTGGTCGAAGCC         >  1:1870134/1‑150                                                                                                              TTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGG‑‑‑‑‑‑‑GCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATA                                                                          <  1:710944/84‑1                                                                                                              TTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGG‑‑‑‑‑‑‑GCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATA                                                                          >  2:710944/1‑84                                                                                                                    TCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGG                                >  1:1407340/1‑127                                                                                                                    TCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGGGCGCCGAGCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGG                                <  2:1407340/127‑1                                                                                                                    TCGGCGCCGCGGCCAAACAGGCGCGCGGCGCCGA‑‑‑‑‑‑‑GCAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTCGAGCCTGGTCGAAGCCGCTCTCA  >  2:97733/1‑150                                                                                                                                                                                                                                                                                  GAGAGCGGCTTCGACCAGGCTCGACTTGCCCATGCCAGCAGCGCCGTTGATGACCAGGGCTTGTGGTTTGCTATCGCGATTCAAGGCCTTGAGCAGCAGGGTGATAGCCTTTTGCTCGGCGCCGCGGCCAAACAGGCGCGCGTGGCCGG‑‑‑‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5980449‑5980299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAAAAGGCTATCACCCTGCTGCTCAAGGCCTTGAATCGCGATAGCAAACCACAAGCCCTGGTCATCAACGGCGCTGCTGGCATGGGCAAGTCGAGCCTGGTCGAAGCCGCTCTCA  >  NC_002947/5980337‑5980450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.