New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5981424 = | 78 (0.840) | 5 (0.060) | 5/238 | NT | 6.4% | coding (2013/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase |
? | NC_002947 | 5981454 = | 73 (0.820) | coding (2043/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase |
AGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTG‑GTGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5981576‑5981424 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacgTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGC > NC_002947/5981454‑5981597 AGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTG‑GTGC > 2:968763/1‑150 GAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTG‑GTGCAC > 2:1927621/1‑150 CGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGATACGTGCA‑CCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGC < 1:686993/150‑1 CCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGATACGTGCA‑CCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGG < 1:2288627/134‑1 CCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGATACGTGCA‑CCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGG > 2:2288627/1‑134 GCATGCAGCGAGGCGCGCTG‑GTGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGC < 1:1147785/144‑1 GCATGCAGCGAGGCGCGCTG‑GTGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGC > 2:1147785/1‑144 TGCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGC > 1:2223546/1‑150 GCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGA < 1:143699/110‑1 GCACGTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGA > 2:143699/1‑110 AGGAACGCTTCGCAGTCATCCGCTGCAAACCCGCAGGGGCTGGCGCGTTGTAGCTGGCTGGCGAGCTCGAACAACACCTCGTGCGTTCGCCCTGGCCAAGCCTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTG‑GTGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5981576‑5981424 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacgTATCGCCCTGGCCATGCGCCAGGCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGC > NC_002947/5981454‑5981597 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |