New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 62619038 (1.080)7 (0.210) 7/260 3.1 15.5% coding (338/816 nt) mtfA glucose‑regulated peptidase
?NC_002947 = 626200 40 (1.190)coding (328/816 nt) mtfA glucose‑regulated peptidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCATGTCGAGCTTGTGCGCCAGCTCATGGATGACCAGGTTGTAAGCCTCCCAGCCACCACTGGCCTGCACGCCGTTCCAGGCCAGGATGATCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/626041‑626190
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccacCGCGATGCCAGTGGCGTGGAGCATGTGT  <  NC_002947/626200‑626173
                                                                                                                                                                                  
GCATGTCGAGCTTGTGCGCCAGCTCATGGATGACCAGGTTGTAAGCCTCCCAGCCACCACTGGCCTGCACGCCGTTCCAGGCCAGGATGATCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCAC                              >  1:312454/1‑150
GCATGTCGAGCTTGTGCGCCAGCTCATGGATGACCAGGTTGTAAGCCTCCCAGCCACCACTGGCCTGCACGCCGTTCCAGGCCAGGATGATCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCAC                              >  1:394535/1‑150
                            GATGACCAGGTTGTAAGCCTCCCAGCCACCACTGGCCTGCACGCCGTTCCAGGCCAGGATGATCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCACCGCGATGCCAGTGGCGTGGAGCATGTGT  <  1:28652/150‑1
                                  CAGGTTGTAAGCCTCCCAGCCACCACTGGCCTGCACGCCGTTCCAGGCCAGGATGATCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCACCGCGATGCCAGTGGC               <  1:200399/131‑1
                                  CAGGTTGTAAGCCTCCCAGCCACCACTGGCCTGCACGCCGTTCCAGGCCAGGATGATCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCACCGCGATGCCAGTGGC               >  2:200399/1‑131
                                                                                          TCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCACCGCGATGCCAGTGGCGTGGA          >  1:58901/1‑80
                                                                                          TCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCACCGCGATGCCAGTGGCGTGGA          <  2:58901/80‑1
                                                                                                        CAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCACCGCGATGCCAGTG                 >  1:212304/1‑59
                                                                                                        CAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCACCGCGATGCCAGTG                 <  2:212304/59‑1
                                                                                                                                                                                  
GCATGTCGAGCTTGTGCGCCAGCTCATGGATGACCAGGTTGTAAGCCTCCCAGCCACCACTGGCCTGCACGCCGTTCCAGGCCAGGATGATCGGCCCCTGTTGCCAGGCTTCGCCGCTGTGTTCGCCGTCCCACACATGCTCCACGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/626041‑626190
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccacCGCGATGCCAGTGGCGTGGAGCATGTGT  <  NC_002947/626200‑626173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.