New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1296580 =	NA (NA)	13 (0.390)	12/254	1.8	NA	intergenic (‑327/‑239)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296616 =	NA (NA)					intergenic (‑363/‑203)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase

TCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1296737‑1296580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccttttGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGT  >  NC_002947/1296616‑1296764                                                                                                                                                                                                                                                                                                                     TCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAAC                                                                                                                                                               <  1:415087/150‑1    GCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATNACTCTCCTACGCGGGTGTGCAGACACACACCAGCGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGC                                                                                                                                                            >  1:539629/1‑150    GCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGC                                                                                                                                                            >  2:792364/1‑150    GCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGC                                                                                                                                                            >  2:243666/1‑150      TGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATTACTCTCCTACGCGGGTATCCGTACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCT                                                                                                                                                          <  1:445924/150‑1              cccggaACTTCACGCCGATACCGCGCGGATCACTCTCCTACGCGGCTGTGCAGACACACACCAGTGCTGGCTACCATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGTCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTT                                                                                                                                                  <  2:400580/144‑1                  GGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGagg                                                                                                                                              >  1:400580/1‑147                                                                 AGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAG                                                                                                                                             <  1:282507/104‑1                                                                 AGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAG                                                                                                                                             >  2:282507/1‑104                                                                                   GCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTT                                                                                                                                                         >  1:198059/1‑74                                                                                                                             AAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGC                                                                                                               >  2:198059/1‑74                                                                                                                               GGCGGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGAT                                                                      <  2:646042/113‑1                                                                                                                               GGCGGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGAT                                                                      >  1:646042/1‑113                                                                                                                                 CGGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCC                                                                    >  1:607900/1‑113                                                                                                                                 CGGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCC                                                                    <  2:607900/113‑1                                                                                                                                  GGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTG                              >  2:15553/1‑150                                                                                                                                  GGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAATGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTG                              >  2:105976/1‑150                                                                                                                                  GGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGC                                >  1:89026/1‑147                                                                                                                                  GGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGC                                <  2:89026/147‑1                                                                                                                                                      CCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTAT          >  1:38966/1‑150                                                                                                                                                        GCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGA        >  1:621828/1‑150                                                                                                                                                          CTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGA      <  2:678086/150‑1                                                                                                                                                          CTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTATGCACACCCGCGTAGGAGAGTGATCCGCACGGTAGCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGg      <  2:26687/150‑2                                                                                                                                                           TTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAG                                        >  2:615215/1‑115                                                                                                                                                           TTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAG                                        <  1:615215/115‑1                                                                                                                                                             TTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTATCCAGCACTGGTGTGTGTGTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCCTCCGCTGATTCAGCTGTGACCACGTATGACAGAG   >  2:359051/1‑150                                                                                                                                                              TGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGT  <  2:145574/150‑1                                                                                                                                                              TGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGT  <  2:492412/150‑1                                                                                                                                                                                                                                                                                                                     TCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1296737‑1296580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccttttGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGT  >  NC_002947/1296616‑1296764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.