New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1296580 =	NA (NA)	13 (0.390)	12/254	1.8	NA	intergenic (‑327/‑239)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296616 =	NA (NA)					intergenic (‑363/‑203)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase

CGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGT  >  NC_002947/1296435‑1296622                                                                                                                                                  |                                           cGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaaag                                        >  1:498248/1‑150 (MQ=255)  gggCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAgg                                       >  1:587644/1‑150 (MQ=255)                  aaaCCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAgg                       <  2:498248/150‑1 (MQ=255)                  aaaCCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAgg                       <  2:587644/150‑1 (MQ=255)                                aGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGACTTCAGTTCCGCAGCGACGCTGACACTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAAGGCCAGCCACCattt         >  2:455211/1‑150 (MQ=14)                                       cATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTAGCGCAGCAAACATGAGGTGTACGGCTTCCGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAATGCTGTTGGCCCGGTAGGGGCAGCCGCCGTTTGCGTTGt  >  1:344711/1‑150 (MQ=11)                                                                                                                                                  |                                           CGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGT  >  NC_002947/1296435‑1296622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.