New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4074203 =	NA (NA)	15 (0.440)	9/262	2.6	69.0%	coding (1256/1329 nt)	PP_3586	transposase
	?	NC_002947	5545215 =	7 (0.200)					intergenic (‑307/+570)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑aagcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4074351‑4074203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  NC_002947/5545215‑5545368                                                                                                                                                                                                                                                                                                                      ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑A                                                                                                                                                           >  1:517446/1‑150  TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  2:67286/150‑1                  AGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        >  2:681964/1‑136                  AGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        <  1:681964/136‑1                            ACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGG                                                                                                                                     >  2:329783/1‑150                                aAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTC                                                                                                                                 <  2:635824/149‑1                                  ATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTG                                                                                                                               <  1:329783/150‑1                                  ATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATCTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTG                                                                                                                               <  2:43220/150‑1                                      ATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTT                                                                                                                           <  1:490637/150‑1                                                       AAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       >  1:147883/1‑100                                                       AAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       <  2:147883/100‑1                                                               TGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTG                                                                                                                                      <  1:624167/114‑1                                                               TGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTG                                                                                                                                      >  2:624167/1‑114                                                                        GTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        <  1:595764/82‑1                                                                        GTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        >  2:595764/1‑82                                                                                   TGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGGCCTGCCGGTCTTGGATTATG                                                                                                                               >  1:627469/1‑96                                                                                                      CAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGC                                                                                                                                    >  1:151463/1‑77                                                                                                      CAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGC                                                                                                                                    <  2:151463/77‑1                                                                                                                            CAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGAT                                >  1:562376/1‑150                                                                                                                                      AGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCAAGAGCGGCAGGTCCGGGCTTCTGGCTTCGAACTCCTCAAGACATTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTG                      >  1:183925/1‑150                                                                                                                                           TTCGAAGCCAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTT‑T‑GCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCA               >  1:721311/1‑150                                                                                                                                              GAAGCCAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCAT              >  1:835500/1‑150                                                                                                                                                   CAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCA                                                               >  2:627469/1‑96                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCA      >  2:721653/1‑150                                                                                                                                                            AGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCTTACAGCACTTGCACAACATAAGCCTGCTGCAGGTTGAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAG     >  1:16183/1‑150                                                                                                                                                             GCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTGGAGTCAGT    >  1:687755/1‑150                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTC   <  1:78748/150‑1                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTC   >  1:114308/1‑150                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGG                                                                                 <  2:297717/72‑1                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGG                                                                                 >  1:297717/1‑72                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  2:513891/1‑150                                                                                                                                                                                                                                                                                                                      ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑aagcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4074351‑4074203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  NC_002947/5545215‑5545368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.