| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4074203 = | NA (NA) | 15 (0.440) | 9/262 | 2.6 | 69.0% | coding (1256/1329 nt) | PP_3586 | transposase |
| ? | NC_002947 | 5545215 = | 7 (0.200) | intergenic (‑307/+570) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
GTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCA > NC_002947/5545066‑5545364 | gTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCaa > 1:124418/1‑150 (MQ=255)attggcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccaga > 1:517446‑M2/150‑150 (MQ=255) ttggcgcatcgcaccgagccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaa < 2:67286‑M2/2‑1 (MQ=255) atTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCg < 1:739348/150‑1 (MQ=255) agccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGc > 2:681964‑M2/133‑136 (MQ=255) agccagactgactcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGc < 1:681964‑M2/4‑1 (MQ=255) actcgaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtgg > 2:329783‑M2/128‑150 (MQ=255) cATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggc < 1:341692/150‑1 (MQ=255) atatTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggct > 1:792688/1‑150 (MQ=255) atatTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggct > 1:771202/1‑150 (MQ=255) aaatggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggcttc < 2:635824‑M2/27‑1 (MQ=255) atggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggcttctg < 1:329783‑M2/29‑1 (MQ=255) atggataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatcttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggcttctg < 2:43220‑M2/29‑1 (MQ=255) ataccagctgcgccatcaaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggcttctggctt < 1:490637‑M2/33‑1 (MQ=255) gggCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActc < 2:771202/150‑1 (MQ=33) gCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcct < 1:857954/150‑1 (MQ=32) aaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc < 2:147883‑M2/5‑1 (MQ=255) aaagccactgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGcc > 1:147883‑M2/96‑100 (MQ=255) tgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtg < 1:624167‑M2/22‑1 (MQ=255) tgcgcatcagttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtg > 2:624167‑M2/93‑114 (MQ=255) gttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGc < 1:595764‑M2/4‑1 (MQ=255) gttggcacgtctggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGc > 2:595764‑M2/79‑82 (MQ=255) tggtgtacaacctgttaaccaagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagAAGCCCGGGCCTGCCGGTCTtggattatg > 1:627469‑M2/68‑96 (MQ=255) caagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggc < 2:151463‑M2/24‑1 (MQ=255) caagaagcaggcttatgttgaacaaggtcttgaggagttcgaagccagaagcaAAGCCCGGACCTGCCGGTCTtggc > 1:151463‑M2/54‑77 (MQ=255) caaggtcttgaggagttcgaaaccagAAGCCAAGACCGGCAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGAt > 1:562376‑M2/27‑150 (MQ=255) aggagttcgaagccagAAGCCAAGAGCGGCAGGTCCGGGCTTCTGGCTTCGAACTCCTCAAGACATTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTg > 1:183925‑M2/17‑150 (MQ=255) ttcgaagccagAAGCCAAGACCGGCAGGTCCGGGCTT‑T‑GCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCa > 1:721311‑M2/12‑150 (MQ=255) gaagccagAAGCCAAGACCGGCAGGTCCGGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCAt > 1:835500‑M2/9‑150 (MQ=255) cagAAGCCAAGACCGGCAGGTCCGGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCa > 2:627469‑M2/4‑96 (MQ=255) AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGagtca > 2:721653‑M2/1‑150 (MQ=255) | GTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCA > NC_002947/5545066‑5545364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |