New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4340085 =	13 (0.370)	10 (0.380)	8/204	2.1	65.0%	intergenic (+26/‑305)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
	?	NC_002947	4340169 =	1 (0.040)					intergenic (+110/‑221)	ribAB‑II/PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein

CCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAG  >  NC_002947/4340108‑4340301                                                              |                                                                                                                                      ccgcgaatgcgtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAgg                                                                                                                       <  1:19886‑M2/17‑1 (MQ=255) ccgcgaatgcgtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAgg                                                                                                                       >  2:19886‑M2/62‑78 (MQ=255) ccgcgaatgcgtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGc                                                                                                         <  2:519040‑M2/30‑1 (MQ=255) ccgcgaatgcgtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGc                                                                                                         >  1:519040‑M2/62‑91 (MQ=255) ccgcgaatgcgtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGccc                                                                                                >  2:96103‑M2/62‑100 (MQ=255) ccgcgaatgcgtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGccc                                                                                                <  1:96103‑M2/39‑1 (MQ=255) CCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCGCTCGGTGCTGTTG‑CAAGCCGGCATGAATGGCCGGTTGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAc                                              <  1:629923‑M1/150‑1 (MQ=255) CCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAc                                              <  1:301038‑M1/150‑1 (MQ=255) CCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGAAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAc                                              <  2:794142‑M1/150‑1 (MQ=255)  cgcgaatgcgtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGt                                                                                                                                   <  1:589877‑M2/5‑1 (MQ=255)  cgcgaatgcgtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGt                                                                                                                                   >  2:589877‑M2/61‑65 (MQ=255)     GAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGcc                                                                                                 >  2:311431‑M1/1‑95 (MQ=255)     GAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGcc                                                                                                 <  1:311431‑M1/95‑1 (MQ=255)           gtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg                                                                          >  1:712650‑M2/52‑112 (MQ=255)           gtcggtggtgtcaccctcgcattcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg                                                                          <  2:712650‑M2/61‑1 (MQ=255)           GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTg                                    <  2:550132‑M1/150‑1 (MQ=255)             gggTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCa                                  <  1:550132/150‑1 (MQ=255)                               attcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCtt                                                                           >  1:600540‑M2/32‑91 (MQ=255)                               attcgcgggtaaacccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCtt                                                                           <  2:600540‑M2/60‑1 (MQ=255)                                             ccgctcctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAg  >  2:273195‑M2/18‑150 (MQ=255)                                                   ctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCataata                                                             <  1:358911‑M2/74‑1 (MQ=255)                                                   ctacagggcccTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCataata                                                             >  2:358911‑M2/12‑85 (MQ=255)                                                              |                                                                                                                                      CCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGA‑TGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCACCTACAATTAAAAACGGCCACCAG  >  NC_002947/4340108‑4340301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.