New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 660887	27 (0.620)	4 (0.100)	4/236	NT	11.4%	intergenic (+16/‑151)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
	?	NC_002947	= 660913	37 (0.920)					intergenic (+42/‑125)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein

TACGTGCACCTGTCGCCGGAAGAGTTGATGACGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/660731‑660887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgctccCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCCCCGTCAATTACGACGACAGGTACGAAGACCGGGTCAAGCCCAGGCGCAAGGCATCCAGATACTGGGTCCGCTCACGCGCAGTGATCTTGGCGCTGGCAACCTTGTCG  <  NC_002947/660913‑660772                                                                                                                                                                                                                                                                                                             cACGGGCACCTGTCGCCGGAAGAGTTGATGACGCATTTACGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGG                                                                                                                                                       <  2:456572/149‑1        ACCTGTCGCCGGAAGAGTTGATGACGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCC                                                                                                                                                >  1:226064/1‑150                                CGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTG                                                                                                                        >  1:33221/1‑150                                              AAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCCCCG                                                                                                          <  2:33221/150‑1                                                      CAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCC                                                                                                                                                >  1:457556/1‑104                                                      CAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCC                                                                                                                                                <  2:457556/104‑1                                                                                    CCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGA                                                                                                                   >  1:613689/1‑103                                                                                    CCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGA                                                                                                                   <  2:613689/103‑1                                                                                                                                                      GCCGCTCCCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCCCCGTCAATTACGACGACAGGTACGAAGACCGGGTCAAGCCCAGGCGCAAGGCATCCAGATACTGGGTCCGCTCACGCGCAGTGATCTTGGCGCTGGCAACCTTGTCG  >  2:251290/1‑150                                                                                                                                                                                                                                                                                                             TACGTGCACCTGTCGCCGGAAGAGTTGATGACGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/660731‑660887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgctccCACAAAAGGCAGCACAGGCTTTTGCAGGAGCGGCCCCGTCAATTACGACGACAGGTACGAAGACCGGGTCAAGCCCAGGCGCAAGGCATCCAGATACTGGGTCCGCTCACGCGCAGTGATCTTGGCGCTGGCAACCTTGTCG  <  NC_002947/660913‑660772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.