New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 660887	27 (0.620)	4 (0.100)	4/236	NT	11.4%	intergenic (+16/‑151)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
	?	NC_002947	= 660913	37 (0.920)					intergenic (+42/‑125)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein

ACCTGTCGCCGGAAGAGTTGATGACGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGG  >  NC_002947/660738‑661032                                                                                                                                                      |                                                                                                                                                  aCCTGTCGCCGGAAGAGTTGATGACGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCC                                                                                                                                                   >  1:226064‑M1/1‑150 (MQ=255)               gagTTGATGACGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTCAGAGGCCCCTGAATCTGGATGCCATGATCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCtgtg                                                                                                                                     <  1:356471/150‑1 (MQ=255)                         cGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCcacaaaaggcagcacaggcttttg                                                                                                                           >  1:33221‑M1/1‑126 (MQ=255)                          gCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCGTTCAAAAGCGTGTGCTGCGTTTtgt                                                                                                                          >  1:231459/1‑150 (MQ=255)                           gaTTACCGCGACAAGGTTGCCAGCGCCAAGATCAATGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTtgtg                                                                                                                         <  2:181843/149‑1 (MQ=255)                                   cgACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGggagcggc                                                                                                                 >  2:251290‑M2/1‑142 (MQ=255)                                       aaGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCcacaaaaggcagcacaggcttttgcaggagcggccccg                                                                                                             <  2:33221‑M1/150‑39 (MQ=255)                                       aaGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTg                                                                                                             >  2:1129502/1‑150 (MQ=255)                                               cAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCC                                                                                                                                                   >  1:457556‑M1/1‑104 (MQ=255)                                               cAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCC                                                                                                                                                   <  2:457556‑M1/104‑1 (MQ=255)                                                 gcgcCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGata                                                                                                   <  2:355330/150‑1 (MQ=255)                                                       aGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAggg                                                                                             <  1:1042840/150‑1 (MQ=255)                                                              tGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGcc                                                                                      >  2:253905/1‑150 (MQ=255)                                                                 gcgTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCTTCGCGATATGAGGGCGAAGCCCTc                                                                                   >  1:802427/1‑150 (MQ=255)                                                                           aCCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCtgt                                                                                                                                      >  1:506713/1‑89 (MQ=255)                                                                           aCCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCtgt                                                                                                                                      <  2:506713/89‑1 (MQ=255)                                                                           aCCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGGGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTca                                                                         >  1:229303/1‑150 (MQ=255)                                                                             ccAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCcacaaaaggcagcacaggcttttgcagga                                                                                                                      >  1:613689‑M1/1‑74 (MQ=255)                                                                             ccAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCcacaaaaggcagcacaggcttttgcagga                                                                                                                      <  2:613689‑M1/103‑30 (MQ=255)                                                                                 tATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCg                                                                   <  2:921986/150‑1 (MQ=255)                                                                                           ccTTGCTCCTGGCCTTGACCCCGCCCTCCCAACCGTTGTCATAATTGTCGTGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATCTGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATcc                                                         <  2:738051/150‑1 (MQ=255)                                                                                            cTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCg                                                        >  2:764047/1‑150 (MQ=255)                                                                                             ttGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCgg                                                       >  2:1078667/1‑150 (MQ=255)                                                                                                         ttGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATc                                           <  1:344735/150‑1 (MQ=255)                                                                                                                 gTCTTCGTACCTGTCGTCGTAATTGACGGGGGCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAAt                                   <  1:672898/150‑1 (MQ=255)                                                                                                                    ttCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGcc                                <  1:253905/150‑1 (MQ=255)                                                                                                                            tGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGGGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCtt                        <  2:229303/150‑1 (MQ=255)                                                                                                                              tcgtcgTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATCTGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGACCTGGTCCATCGCACCAATGCCGCTACCTTTg                      >  2:176203/1‑150 (MQ=255)                                                                                                                              tcgtcgTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTg                      >  1:640866/1‑150 (MQ=255)                                                                                                                                gtcgtAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGaa                    <  1:164087/150‑1 (MQ=255)                                                                                                                                     aaTTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCaa               <  2:226064/150‑1 (MQ=255)                                                                                                                                     aaTTGACGCGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGTGAGCCGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCCGCGTCACAACCCGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCaa               <  2:539663/150‑1 (MQ=255)                                                                                                                                       ttGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCTCACCAATGCCGCTACCTTTGAATGCAATg             <  1:1019489/150‑1 (MQ=255)                                                                                                                                       ttGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATg             <  1:1129502/150‑1 (MQ=255)                                                                                                                                           cGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGggagcggccccgtcaattacgacgacaggtacgaagaccgggtcaagcccaggcgcaaggcatccagatactgggtccgctcacgcgcagtgatcttggcgctggcaacctt         <  2:33221‑M2/150‑113 (MQ=255)                                                                                                                                             gggCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCaaa       <  1:969381/150‑1 (MQ=255)                                                                                                                                               gCCGCTCCcacaaaaggcagcacaggcttttgcaggagcggccccgtcaattacgacgacaggtacgaagaccgggtcaagcccaggcgcaaggcatccagatactgggtccgctcacgcgcagtgatcttggcgctggcaaccttgtcg     >  2:251290‑M1/1‑8 (MQ=255)                                                                                                                                                  gCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAaggagg  <  1:764047/150‑1 (MQ=255)                                                                                                                                                    tCCTGCAAAAGCCTGTGCTGCCTTTTGTGggagcggccccgtcaattacgacgacaggtacgaagaccgggtcaagcccaggcgcaaggcatccagatactgg                                               <  2:613689‑M2/103‑75 (MQ=255)                                                                                                                                                    tCCTGCAAAAGCCTGTGCTGCCTTTTGTGggagcggccccgtcaattacgacgacaggtacgaagaccgggtcaagcccaggcgcaaggcatccagatactgg                                               >  1:613689‑M2/1‑29 (MQ=255)                                                                                                                                                      cTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTg                                                  <  1:254032/98‑1 (MQ=255)                                                                                                                                                      cTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTg                                                  >  2:254032/1‑98 (MQ=255)                                                                                                                                                      |                                                                                                                                                  ACCTGTCGCCGGAAGAGTTGATGACGCATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGG  >  NC_002947/660738‑661032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.