New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2131135 = | 45 (1.040) | 4 (0.100) | 4/242 | NT | 8.3% | coding (1107/2496 nt) | fimD | type I pili subunit FimD |
? | NC_002947 | 2131175 = | 45 (1.090) | coding (1067/2496 nt) | fimD | type I pili subunit FimD |
CGCCATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTCCGCCGCTTCATCCAGCCGTACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2131288‑2131135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgcAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTCGTCGATGGCGTAGGGGCCGGCGCTGACGTACGTCGAGTAGA > NC_002947/2131175‑2131319 CGCCATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTACGACCCTTCATCCAGCGGAACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGG < 1:689670/150‑1 CATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTCCGCCGCTTCATCCAGCCGTACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCG > 1:1125326/1‑150 ATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTCCGCCGCTTCATCCAGCCGTACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGC < 2:1125326/150‑1 CCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGA < 1:1049443/123‑1 CCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGA > 2:1049443/1‑123 GCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGAC < 1:230968/109‑1 GCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGAC > 2:230968/1‑109 GGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTAGTCGATGGCGTAGGGGCCGGCGCGGACGTACGTAGAGAAGA > 2:456013/1‑150 CGCCATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTCCGCCGCTTCATCCAGCCGTACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2131288‑2131135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgcAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTCGTCGATGGCGTAGGGGCCGGCGCTGACGTACGTCGAGTAGA > NC_002947/2131175‑2131319 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |